BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF02FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig660 615 e-176
>3x_Contig660
Length = 1656
Score = 615 bits (310), Expect = e-176
Identities = 345/354 (97%), Gaps = 2/354 (0%)
Strand = Plus / Minus
Query: 181 acgtctttaatttttttaaatatacaggattttaatagtttataaaattatgtccaatgc 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1646 acgtctttaatttttttaaatatacaggattttaaaagtttataaaattatgtccaatgc 1587
Query: 241 acaacaaacattgtcttttcaccaacaacaatgaaaagaccgtctgttagatgcgtttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 acaacaaacattgtcttttcaccaacaacaatgaaaagaccgtctgttagatgcgtttcc 1527
Query: 301 taaatttaataatgtacaataattataatg-acaatagtaatgtgcgatatactttagtt 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1526 taaatttaataatgtacaataattataatgcacaatagtaatgtgcgatatactttagtt 1467
Query: 360 ttactcggtgtccgccgatttgttctttttaacatattcagcagccttggcttttacata 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1466 ttactcggtgtccgccgatttgttctttttaacatattcagcagccttggctttaacata 1407
Query: 420 gtcgaccagtttttgatcgtccttctgttctttaaattgtaaccactttgttgaaaaaga 479
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 1406 gtcgaccagtttttgatcgtccttctgttcttcaaattgtaaccac-ttgttgaaaaaga 1348
Query: 480 actttgcttgttttttagtgatctttttagtgataacttttttcaagagatcct 533
|||||||||||||| ||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1347 actttgcttgttttctagtgatctttttagtgataactctttcaaagagatcct 1294
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,270
Number of Sequences: 1807
Number of extensions: 11270
Number of successful extensions: 107
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)