BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF02RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig681 1253 0.0
>3x_Contig681
Length = 3369
Score = 1253 bits (632), Expect = 0.0
Identities = 682/692 (98%), Gaps = 5/692 (0%)
Strand = Plus / Plus
Query: 44 gcttttcgataagcaacccggattctttgctcaatttacaaacagtaacgggtataaaat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gcttttcgataagcaacccggattctttgctcaatttacaaacagtaacgggtataaaat 746
Query: 104 tttactcagtatactctcaactcattcgatcagtgaagcggagctattaacaacaattct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tttactcagtatactctcaactcattcgatcagtgaagcggagctattaacaacaattct 806
Query: 164 taacgtatctgcttccaaaggcacagtgaaaagggacctgttttataagaatattctatc 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 807 taacgtatctgcttccaaaggcacagtgaaaagggacctgttttataagaatatcctatc 866
Query: 224 tccgcctgacgatggaatctcacttttctctcattcagtggttattaacttgttagattc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tccgcctgacgatggaatctcacttttctctcattcagtggttattaacttgttagattc 926
Query: 284 ttttattaagagaaatcccttcgccatccaagaatttttgctaactttcattgaatatct 343
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 927 ttttattaagagaaatccct-cgccatccaagaatttttgctaactttcattgaatatct 985
Query: 344 caaaaaaatgcaccaaagaaatcctaatcatatccttttcacatctccttatcctatcat 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 caaaaaaatgcaccaaagaaatcctaatcatatccttttcacatctccttatcctatcat 1045
Query: 404 tcaaagtatcttcggattacaaatgaatc-ttgaaatgttggcggtggaaaagttattac 462
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1046 tcaaagtatcttcggattacaaatgaatccttgaaatgttggcggtggaaaagttattac 1105
Query: 463 caacagtaaacgtatgcaacaaatcgctactagcagacattattgttcagaagatgaaaa 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 caacagtaaacgtatgcaacaaatcgctactagcagacattattgttcagaagatgaaaa 1165
Query: 523 cttacgatccagaatcattcaaaactctcctaagttatattgttagttacagcgaaaata 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1166 cttacgatccagaatcattcaaaactctcctaagttatattgttagttacagcgaaaata 1225
Query: 583 gtaagaggccgaaaagttctcaaatatgccaaaaaatggggctcgtatttttaatagtgc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1226 gtaagaggccgaaaagttctcaaatatgccaaaaaatggggctcgtatttttaatagtgc 1285
Query: 643 ctagaatactaaaaagactatctgctttgtctttcactgtggaaaaagacccctcaaaaa 702
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||
Sbjct: 1286 ctagaatactaaaaagactatctgctttgtctttcactgtggaaaaggaccactc-aaaa 1344
Query: 703 cttgtgttttgtaggaaattattctacacctt 734
|| ||| |||||| |||| |||||||||||||
Sbjct: 1345 ctagtg-tttgta-gaaaatattctacacctt 1374
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7977
Number of Sequences: 1807
Number of extensions: 7977
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)