BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF03FM1.SCF screened BAC_end
(1182 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 303 4e-82
>3x_Contig1629
Length = 12481
Score = 303 bits (153), Expect = 4e-82
Identities = 205/221 (92%), Gaps = 1/221 (0%)
Strand = Plus / Minus
Query: 257 ccacagctctagctagttaatattaatacacaatgtctcacagaaagtactaagctccac 316
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10355 ccacagctctagctagttaatattaatacacaatgtctcacagaaagtacgaagctccac 10296
Query: 317 gtcacggtcatttaggtttcttgccaagaaagagagctgcctctgttagaggtatagtta 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 10295 gtcacggtcatttaggtttcttgccaagaaagagagctgcctctgttagaggtagagtta 10236
Query: 377 agtctttcctcaaggacgaccaacctaatccagttgctttgacctcttttttgggttaca 436
||||||||| |||||||||||| |||| ||||||||||||||||||| ||||||||||
Sbjct: 10235 agtctttcccaaaggacgaccaaactaaggcagttgctttgacctctttcttgggttaca 10176
Query: 437 tcgctgctattttccactatctttagatactgggacagacc 477
|||| || | ||||||||| ||||| ||| |||||||||
Sbjct: 10175 aggctggta-tgtccactatcgttagagacttggacagacc 10136
Score = 244 bits (123), Expect = 3e-64
Identities = 126/127 (99%)
Strand = Plus / Minus
Query: 120 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10492 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 10433
Query: 180 atatgtaaagttgaaagtgtttattggtatctactttgtttatttcccttccccatcgca 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10432 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 10373
Query: 240 aaactct 246
|||||||
Sbjct: 10372 aaactct 10366
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,251
Number of Sequences: 1807
Number of extensions: 28251
Number of successful extensions: 2533
Number of sequences better than 1.0e-20: 1
length of query: 1182
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1166
effective length of database: 10,329,639
effective search space: 12044359074
effective search space used: 12044359074
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)