BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF04FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1198 1211 0.0
>3x_Contig1198
Length = 5263
Score = 1211 bits (611), Expect = 0.0
Identities = 694/711 (97%), Gaps = 8/711 (1%)
Strand = Plus / Plus
Query: 86 ttatgaattttattggtaatctggactcagcagagttatcaaatattctacagacccttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ttatgaattttattggtaatctggactcagcagagttatcaaatattctacagacccttt 162
Query: 146 taacgcgttggtcaactctcgtcgattcatcattcggaaataagaacatatcacacctga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 taacgcgttggtcaactctcgtcgattcatcattcggaaataagaacatatcacacctga 222
Query: 206 tcgaaaaactacttcaaaatcacatcgatattttgcctgtgctattcgctgaagaggatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tcgaaaaactacttcaaaatcacatcgatattttgcctgtgctattcgctgaagaggatt 282
Query: 266 tttttgaagagtctaacattgttcgttcgatagtggttcacttgacagccgatgttaatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttttgaagagtctaacattgttcgttcgatagtggttcacttgacagccgatgttaatt 342
Query: 326 ctaaccttcatctgaagtatttattggaaattccaattcaatgtttgaataaggctgtaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctaaccttcatctgaagtatttattggaaattccaattcaatgtttgaataaggctgtaa 402
Query: 386 gattggcaatcctagaccaaataatagagaaggatgttttgaaagaggatgacataaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gattggcaatcctagaccaaataatagagaaggatgttttgaaagaggatgacataaatg 462
Query: 446 ttctttgtcatgttttgaaaaaccctacctcgaggagcaaaatagaaaccgattataaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttctttgtcatgttttgaaaaaccctacctcgaggagcaaaatagaaaccgattataaaa 522
Query: 506 caatgctcacgtttgtcggcaattcattcttcaaatatagcttggaaaatccggttattg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 caatgctcacgtttgtcggcaattcattcttcaaatatagcttggaaaatccggttattg 582
Query: 566 cagccgtttggcagagtgcactgcttcaaag-aacgacaac-aagcatctt-atccatgg 622
||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct: 583 cagccgtttggcagagtgcactgcttcaaagaaacgacaacaaagcatcttcatccatgg 642
Query: 623 attctctattac-aagcattcaggcaaatttgaatcatacctttgattataacacttatg 681
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 attctctattacaaagcattcaggcaaatttgaatcatacctttgattataacacttatg 702
Query: 682 ccttgttgcatttggtactc-aaacatgcgatgaatta-ggttgcatttaaatgcttttt 739
||||||||||| |||||||| ||||||||||||||| | ||||||||||| |||| | ||
Sbjct: 703 ccttgttgcatctggtactcaaaacatgcgatgaatcagggttgcatttagatgc-tctt 761
Query: 740 aaggtttagttcatcaataagttggtttacaatatttcagcattttaacgg 790
|||||| |||||||||||| ||| ||||||||| |||||||||| |||||
Sbjct: 762 aaggttaagttcatcaatagtttgatttacaata-ttcagcatttcaacgg 811
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7729
Number of Sequences: 1807
Number of extensions: 7729
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)