BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF04RM1.SCF screened BAC_end
(889 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1009 1053 0.0
>3x_Contig1009
Length = 4650
Score = 1053 bits (531), Expect = 0.0
Identities = 730/786 (92%), Gaps = 9/786 (1%)
Strand = Plus / Minus
Query: 44 gcttgtctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 gcttgtctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtt 1546
Query: 104 tgagttttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 tgagttttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaat 1486
Query: 164 ataaaatatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 ataaaatatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttat 1426
Query: 224 atataaaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 atataaaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatat 1366
Query: 284 taatctcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaaga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 taatctcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaaga 1306
Query: 344 taacgaggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 taacgaggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttt 1246
Query: 404 taaggtacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 taaggtacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaa 1186
Query: 464 ttttttgttggctttttcttttgcatcttaaaaacgtgtgtaggactgagagttttgtgc 523
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1185 ttttttgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgc 1126
Query: 524 gaaatcttgagtgtgtggactgaaaaaccgggaaataaaagggggctgactaatggtatt 583
||||||||||||||||||||||| |||| | |||||||| | || |||||||| || |
Sbjct: 1125 gaaatcttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcat 1066
Query: 584 ggggaacgaagcccgaacatagggctgggcccggggcctggtccctttttcccaccagt- 642
| |||||| ||| ||||||||||| ||| |||||||| ||||||| | || ||||
Sbjct: 1065 tgtgaacgacgccgacacatagggctgtgccgggggcctgtacccttttccaca-cagta 1007
Query: 643 gtaattaataataaacatttgctttggtggaagtttaacggcataaactgggaacttttg 702
|||| |||||||||||||| |||| ||| || |||||||||||||||||| |||| |||
Sbjct: 1006 gtaa-taataataaacattagcttcggt-gatgtttaacggcataaactgtaaactattg 949
Query: 703 ggttgcccggtcgtatttagggcattttttggcaacccgtaaactgggaagggggctaaa 762
| |||| | ||||| ||| |||||||| ||||| ||||||||||||| || ||| ||
Sbjct: 948 gtatgccggtccgtatgtagtgcattttt--gcaacacgtaaactgggaa-ggagct-aa 893
Query: 763 atggattttttaaattgaatccccaaaattaagggggcggtttatcccgtttggttacct 822
|| ||||||||||||||| | | |||| ||||||| |||||||| | |||||| |||| |
Sbjct: 892 attgattttttaaattgatttctcaaatttaagggtgcggttta-cgcgtttgtttacgt 834
Query: 823 tttttg 828
||||||
Sbjct: 833 tttttg 828
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8086
Number of Sequences: 1807
Number of extensions: 8086
Number of successful extensions: 487
Number of sequences better than 1.0e-20: 1
length of query: 889
length of database: 10,358,551
effective HSP length: 16
effective length of query: 873
effective length of database: 10,329,639
effective search space: 9017774847
effective search space used: 9017774847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)