BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF05FM1.SCF screened BAC_end
(999 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig487 811 0.0
>3x_Contig487
Length = 1564
Score = 811 bits (409), Expect = 0.0
Identities = 467/481 (97%), Gaps = 4/481 (0%)
Strand = Plus / Minus
Query: 86 tcttactgtttcagaaccattaggtaatccttcccttcgcgtttccagggaacgggtggg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcttactgtttcagaaccattaggtaatccttcccttcgcgtttccagggaacgggtggg 560
Query: 146 acgttgtgctcgagtcaaaggagtgtttgccccaggttttctgtacaattgacttaagga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acgttgtgctcgagtcaaaggagtgtttgccccaggttttctgtacaattgacttaagga 500
Query: 206 taccacttttttttttttgtttcggttcgtgttgtcacttccgcttttacctttaacaat 265
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taccactttttttttcttgtttcggttcgtgttgtcacttccgcttttacctttaacaat 440
Query: 266 catataaaggaagttcgattaacggttggtgatttcgtttgacattttaaattccacgtt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catataaaggaagttcgattaacggttggtgatttcgtttgacattttaaattccacgtt 380
Query: 326 aggggaaaattaatccggtttaagtttggtttacattttcattgtttgttatttgttatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aggggaaaattaatccggtttaagtttggtttacattttcattgtttgttatttgttatt 320
Query: 386 tggattttcgtgatggataaggataatttgaatattaatttacaggattggttgaatgat 445
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 319 tggattttcgtgatggataaggataatttgaatatcaatttacaggattggttgaatgat 260
Query: 446 ccgatgttggcagcttacttgaatcgagctcaatctt-aacgccgacaattttcaatggt 504
||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 259 ccgatgttggcagctcagctgaatcgagctcaatcttcaacgccgacaattttcaatggt 200
Query: 505 atggatgatacacgaaacggatttttttgttgtacaacagaaaaagcgattccgacaaaa 564
|||||||||||| |||||| | || ||||||||||||| |||||||| ||||||||||
Sbjct: 199 atggatgatacagcgaacgga-tcttctgttgtacaacag-aaaagcga-tccgacaaaa 143
Query: 565 a 565
|
Sbjct: 142 a 142
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,712
Number of Sequences: 1807
Number of extensions: 16712
Number of successful extensions: 154
Number of sequences better than 1.0e-20: 1
length of query: 999
length of database: 10,358,551
effective HSP length: 16
effective length of query: 983
effective length of database: 10,329,639
effective search space: 10154035137
effective search space used: 10154035137
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)