BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZF05RM1.SCF screened BAC_end
         (955 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1215                                                        1156   0.0  

>3x_Contig1215 
          Length = 7125

 Score = 1156 bits (583), Expect = 0.0
 Identities = 643/657 (97%), Gaps = 7/657 (1%)
 Strand = Plus / Plus

                                                                        
Query: 48   tcggtaaattcacccaaattttcatctggaaagttcccaaaacattgaatttcatttcta 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3875 tcggtaaattcacccaaattttcatctggaaagttcccaaaacattgaatttcatttcta 3934

                                                                        
Query: 108  gatgaattttccaactcagattcagtcgcataaattgagcaaccgccttttccaacttct 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3935 gatgaattttccaactcagattcagtcgcataaattgagcaaccgccttttccaacttct 3994

                                                                        
Query: 168  tctttgttaatcttgtcgtcagaaccgaacatcaaatctccagcttgaatcataaaattc 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3995 tctttgttaatcttgtcgtcagaaccgaacatcaaatctccagcttgaatcataaaattc 4054

                                                                        
Query: 228  ttaatgattctatggaagtgatttcttttatagcttaacactttaccattaagattgaca 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4055 ttaatgattctatggaagtgatttcttttatagcttaacactttaccattaagattgaca 4114

                                                                        
Query: 288  tctcctctgcatagatgtataaagttagcacatgttttaggggcttgttcgtcgaacagt 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4115 tctcctctgcatagatgtataaagttagcacatgttttaggggcttgttcgtcgaacagt 4174

                                                                        
Query: 348  tcgcatacgattcggcctattggctcatcgccgatcttaatatcaagatatactttgtgc 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4175 tcgcatacgattcggcctattggctcatcgccgatcttaatatcaagatatactttgtgc 4234

                                                                        
Query: 408  atttcaacaatgaattcaatcttacaggaggagcagttatcctttttgacctattacctt 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4235 atttcaacaatgaattcaatcttacaggaggagcagttatcctttttgacctattacctt 4294

                                                                        
Query: 468  atctttttctattgttactttgaccacagctataaagcgcaacttagctttggaacaagg 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4295 atctttttctattgttactttgaccacagctataaagcgcaacttagctttggaacaagg 4354

                                                                        
Query: 528  aggctttaactgatgggatgaggtattcgttctcatctcatcactggtcttaaactagct 587
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4355 aggctttaactgatgggatgaggtattcgttctcatctcatcactgttcttaaactagct 4414

                                                                        
Query: 588  gttcattcgtaatgtcaaattcggagatccattttgtccgggtaagaaaacttttttcaa 647
            ||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||
Sbjct: 4415 gttcattcgtaatgtcaaattcgtagat-cattttgtccgggtaag-aaacttttatcaa 4472

                                                                     
Query: 648  agttcaagccgatctggaattggggaccctcgaaatcaaaccaaaacctttgggaac 704
            ||||| || |||||||| ||||||   ||||||||||||||  ||| ||||||||||
Sbjct: 4473 agttc-aggcgatctggtattggg--acctcgaaatcaaac--aaaactttgggaac 4524


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8066
Number of Sequences: 1807
Number of extensions: 8066
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)