BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF06FM1.SCF screened BAC_end
(1113 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1588 452 e-127
>3x_Contig1588
Length = 14692
Score = 452 bits (228), Expect = e-127
Identities = 276/292 (94%)
Strand = Plus / Plus
Query: 108 ctaaaccacgatatatctatatggattcaatggggttcggaatggggtgttcctgtttgc 167
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5733 ctaaaccaggatatatctatatggattcaatggggttcggaatggggtgttcctgtttgc 5792
Query: 168 aattgactttccaggctcctaatattaataaggcacgctatttgtacgatactttgatga 227
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct: 5793 aattgactttccaggctcctaatatcaataaggcacgttatttgtacgatactttgttga 5852
Query: 228 attttgcgcctttttttttggccgcaactgctgtctcttcagcattcaaggggttccttg 287
|||||||||| |||| |||||||||||||||| |||| ||| |||||||||||||||||
Sbjct: 5853 attttgcgccaattttcttggccgcaactgctgcctctccagtattcaaggggttccttg 5912
Query: 288 cagatcaagacctgcgttggaacgttatcttaggtgcatttgatgatcttactccatatt 347
||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct: 5913 cagatcaagacgtgcgttggaacgttatcgtaggtgcagttgatgatcgtactccatatg 5972
Query: 348 aaagatcagtggagccattgctacccaattataataacgggtatggtggtat 399
|||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5973 aaagatcagtggagccattgctacccaagtataataacgggtatggtggtat 6024
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9834
Number of Sequences: 1807
Number of extensions: 9834
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 1113
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1097
effective length of database: 10,329,639
effective search space: 11331613983
effective search space used: 11331613983
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)