BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF07FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1792 1146 0.0
>3x_Contig1792
Length = 28468
Score = 1146 bits (578), Expect = 0.0
Identities = 628/638 (98%), Gaps = 5/638 (0%)
Strand = Plus / Plus
Query: 89 ttgagtgaaatattcaacatgctggtaagaaggtgcgccagcgattaaggccatctttct 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15735 ttgagtgaaatattcaacatgctggtaagaaggtgcgccagcgattaaggccatctttct 15794
Query: 149 aatgaagataggcaacagcatcattaacacggccaacgcgatggttggagccaaactggt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15795 aatgaagataggcaacagcatcattaacacggccaacgcgatggttggagccaaactggt 15854
Query: 209 tatgataccaatcaattgatctggcatgttgtagataaatttcaaccatggtaatttgtt 268
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15855 tatgataccaagcaattgatctggcatgttgtagataaatttcaaccatggtaatttgtt 15914
Query: 269 agtcaagtaggtgatattggagaccataccgacaaatgcaacggggaaagcccacaagat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15915 agtcaagtaggtgatattggagaccataccgacaaatgcaacggggaaagcccacaagat 15974
Query: 329 gaccaaggcaacaatggcagcaatactaccgaattttctaaccaatctttccaaccagaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15975 gaccaaggcaacaatggcagcaatactaccgaattttctaaccaatctttccaaccagaa 16034
Query: 389 cattctcaagttgaaccattgaacgtctgtaggcgagataccgacgtacgctggagtcaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16035 cattctcaagttgaaccattgaacgtctgtaggcgagataccgacgtacgctggagtcaa 16094
Query: 449 tgacaatggtgaatggtgactaaccatttggaccgctttctgagcatcgtactgagtatt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16095 tgacaatggtgaatggtgactaaccatttggaccgctttctgagcatcgtactgagtatt 16154
Query: 509 gaattcgacaaagacggaattcattggtttttcttccatatgtttgttttgcaactcttg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16155 gaattcgacaaagacggaattcattggtttttcttccatatgtttgttttgcaactcttg 16214
Query: 569 aatctttgcatttagttcaggcaactttctcctttgcatagttgatagtatccacttttc 628
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 16215 aatctttgcatttagttcaggcaac-ttctcctttgcatagttgatagtatccactttct 16273
Query: 629 taccaattacaggttttcaacctatgagaaaggtcttttcttctctggcacgtattgagt 688
||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 16274 taccaataacagg-tttcaacctatgag-aaggtcttttcttctctggcacgtattgagt 16331
Query: 689 aatattcgttagcaatccttacttggatcgggaccacc 726
|||| ||||||||||| |||||||||||||| ||||||
Sbjct: 16332 aata-tcgttagcaat-cttacttggatcggcaccacc 16367
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8902
Number of Sequences: 1807
Number of extensions: 8902
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)