BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZF07RM1.SCF screened BAC_end
         (969 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1582                                                        1067   0.0  

>3x_Contig1582 
          Length = 14087

 Score = 1067 bits (538), Expect = 0.0
 Identities = 564/570 (98%), Gaps = 2/570 (0%)
 Strand = Plus / Minus

                                                                       
Query: 45  cttcggcatcagtactgtcaagtgcagcttcgaatgctttgaaaacctttcttacgatta 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 cttcggcatcagtactgtcaagtgcagcttcgaatgctttgaaaacctttcttacgatta 807

                                                                       
Query: 105 tcgaatatgaaccaattaactgtttcataacatgaatcatgcattgctgtgcgggtctgt 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tcgaatatgaaccaattaactgtttcataacatgaatcatgcattgctgtgcgggtctgt 747

                                                                       
Query: 165 gaatgtttggatacaccgatagagataaagaaatgacatcattcaaaagtttctattcca 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 746 gaatgtttggatacaccgatagagataaagaaatgacatcattcaaaagtttcaattcca 687

                                                                       
Query: 225 gtttcgatggtttcctattagttgaatataaggtaagtctagactggtgaagttcctgac 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gtttcgatggtttcctattagttgaatataaggtaagtctagactggtgaagttcctgac 627

                                                                       
Query: 285 agtcagctgcgagatacgttcttgtaaatggaaggaacggttcctcccagtgtgctatgt 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 agtcagctgcgagatacgttcttgtaaatggaaggaacggttcctcccagtgtgctatgt 567

                                                                       
Query: 345 cttgtatgttttctaggaatttcacagatatcgacgcctttggatcatcaatgaatatag 404
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cttgtatgttttctaggaattccacagatatcgacgcctttggatcatcaatgaatatag 507

                                                                       
Query: 405 tttcttgcccaacatcagtaaaccagaccttcaaaccatgtaataaagtctggaatacgg 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttcttgcccaacatcagtaaaccagaccttcaaaccatgtaataaagtctggaatacgg 447

                                                                       
Query: 465 atgttgaattctcataattttgatttaaaaatttgaagagcttgtgtaagaataaaccaa 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atgttgaattctcataattttgatttaaaaatttgaagagcttgtgtaagaataaaccaa 387

                                                                       
Query: 525 tctcgtgtctcaaatgatgtatttttgagtatctgggatcaagcgcacgttcagctggtt 584
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 386 tctcgtgtctcaaatgatgtatttttgagtatctgggatcaagcgcacgttcagct-gct 328

                                         
Query: 585 gttcttccaaagaaattatttgtacgaaaa 614
           ||||||||||||||| || |||||||||||
Sbjct: 327 gttcttccaaagaaa-taattgtacgaaaa 299


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7856
Number of Sequences: 1807
Number of extensions: 7856
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)