BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF08FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1086 0.0
>3x_Contig1718
Length = 19496
Score = 1086 bits (548), Expect = 0.0
Identities = 625/644 (97%), Gaps = 5/644 (0%)
Strand = Plus / Minus
Query: 86 ttttaaaaactacttataatcccagtttgattgtcagcgggctttccttagatctctggt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13704 ttttaaaaactacttataatcccagtttgattgtcagcgggctttccttagatctctggt 13645
Query: 146 gtgcatgcttgagaaacgatgaatttttaccaattttagagaaattggttattcccgact 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13644 gtgcatgcttgagaaacgatgaatttttaccaattttagagaaattggttattcccgact 13585
Query: 206 tgttggagttttttttaaatgctttgatttactacgaacagattgaagatcatgtctcca 265
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13584 tgttggagtttgctggaaatgctttgatttactacgaacagattgaagatcatgtctcca 13525
Query: 266 agaatttcgttgaagtggacttccagtcgacagctgaatacgagaactactgttcaagct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13524 agaatttcgttgaagtggacttccagtcgacagctgaatacgagaactactgttcaagct 13465
Query: 326 atagaaagagaatcagggatattatccgcctcatatcatgtgttcaactagactttgcat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13464 atagaaagagaatcagggatattatccgcctcatatcatgtgttcaactagactttgcat 13405
Query: 386 atgattggttatgtgagagacttaataaatactttggatctcaatttggacaacaagttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13404 atgattggttatgtgagagacttaataaatactttggatctcaatttggacaacaagttc 13345
Query: 446 tcagttctacttatttggatcacaagtcggaaccatatttgagtgctctgactcaaatta 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 13344 tcagttctacttatttggatcacaagtcggaaccatatttgagtgctctgactcaattta 13285
Query: 506 tgattgtagaatgtttcattaatggttgtatacgatggaagatatggtatacagacgaat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13284 tgattgtagaatgtttcattaatggttgtatacgatggaagatatggtatacagacgaat 13225
Query: 566 caacttttattcaaaagcttgacgcaattctttgcg-aagtggaaatgttatccaaccaa 624
||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 13224 caactttcagtcaaaagcttgacgcaattc-ttgcgaaagtggaaatgttatccaaccaa 13166
Query: 625 cttttagcattaaatttgagagagccattcctcttgaaaaaacaaattcaaaactttgct 684
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 13165 cttttagcattaaatttgagagagccattactcttgaagaaacaaattcaaaactttgc- 13107
Query: 685 tttattttaaacttttttggaaggacaaccttgcttttcacgtt 728
||||| | |||| |||| ||||||||| | |||||||||||||
Sbjct: 13106 attattcttaactatttt-gaaggacaa-cgtgcttttcacgtt 13065
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7631
Number of Sequences: 1807
Number of extensions: 7631
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)