BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF08RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 835 0.0
3x_Contig1585 317 2e-86
>3x_Contig1475
Length = 10676
Score = 835 bits (421), Expect = 0.0
Identities = 484/501 (96%), Gaps = 3/501 (0%)
Strand = Plus / Minus
Query: 48 tatacttgatggttggtttatgtttcgttgataaagaaggtttctctgtgttcccattgt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8508 tatacttgatggttggtttatgtttcgttgataaagaaggtttctctgtgttcccattgt 8449
Query: 108 cacctgtcgaagtgttgtggattattgtcgttacctcatgtttcccagctatgggtcttg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8448 cacctgtcgaagtgttgtggattattgtcgttacctcatgtttcccagctatgggtcttg 8389
Query: 168 gtttagagaaggccagtgttgacgttatggaaaagccaccaaaggatgccattgctgttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8388 gtttagagaaggccagtgttgacgttatggaaaagccaccaaaggatgccaaggctgttg 8329
Query: 228 ttttcacctgggaagtcattattgatatgcttgtatacggtgtcatcatggcagcatgtt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8328 ttttcacctgggaagtcattattgatatgcttgtatacggtgtcatcatggcagcatgtt 8269
Query: 288 gtatggcatgtttcgttaccgtgctctatggtaccggtgatggtaacttgggttctgact 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8268 gtatggcatgtttcgttaccgtgctctatggtaccggtgatggtaacttgggttctgact 8209
Query: 348 gtaacgatgcactttggtgaaacgtgtcacttggttttcagaggccgtgctgcagcattt 407
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8208 gtaacgatgcac-ttggtgaaacgtgtcacttggttttcagaggccgtgctgcagcattt 8150
Query: 408 gcaacattgacttggtgtgcattgattttagcctgggaagttgtcgacatgagaagatca 467
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8149 gcaacaatgacttggtgtgcattgattttagcctgggaagttgtcgacatgagaagatca 8090
Query: 468 ttctttatgatgaaccccttaagtgaaacaccttacacttcaatgtttcaaggacctttg 527
||||| ||||||||||| |||||||||||| ||||| |||| ||||||||| | ||
Sbjct: 8089 ttcttcatgatgaaccctgaaagtgaaacaccatacac-tcaagtgttcaaggacatctg 8031
Query: 528 gagcaattaatttcttgtttt 548
||||||| || ||||||||||
Sbjct: 8030 gagcaatcaa-ttcttgtttt 8011
>3x_Contig1585
Length = 11490
Score = 317 bits (160), Expect = 2e-86
Identities = 365/432 (84%), Gaps = 1/432 (0%)
Strand = Plus / Plus
Query: 50 tacttgatggttggtttatgtttcgttgataaagaaggtttctctgtgttcccattgtca 109
||||||||||||||||||||||| ||||| | ||||| ||||| || |||||||| ||
Sbjct: 303 tacttgatggttggtttatgttttcttgatgaggaagggttctcagtattcccattatct 362
Query: 110 cctgtcgaagtgttgtggattattgtcgttacctcatgtttcccagctatgggtcttggt 169
|||||||| || |||||| ||||||| |||||||||||||| ||||| |||||||| |||
Sbjct: 363 cctgtcgaggttttgtgggttattgttgttacctcatgttttccagcaatgggtctcggt 422
Query: 170 ttagagaaggccagtgttgacgttatggaaaagccaccaaaggatgccattgctgttgtt 229
|| |||||||| | ||||||||| ||||| ||||||||||||||||||| |||||| |
Sbjct: 423 ttggagaaggctaatgttgacgtgatggagaagccaccaaaggatgccaaagctgttata 482
Query: 230 ttcacctgggaagtcattattgatatgcttgtatacggtgtcatcatggcagcatgttgt 289
||||| ||||||||||| | ||||||||||| || ||||| || || |||||||||||
Sbjct: 483 ttcacgtgggaagtcatcgtcgatatgcttgtctatggtgtaattattgcagcatgttgc 542
Query: 290 atggcatgtttcgttaccgtgctctatggtaccggtgatggtaacttgggttctgactgt 349
||||||||||| || || || |||||||||| ||||||||||| ||||| | |||
Sbjct: 543 atggcatgttttgtcacggtaatctatggtactggtgatggtaatttgggccgcgggtgt 602
Query: 350 aacgatgcactttggtgaaacgtgtcacttggttttcagaggccgtgctgcagcatttgc 409
||| ||| ||||| ||| |||||| |||||| |||| ||||||||||||||||| ||
Sbjct: 603 aacaatg-gctttgatgattcgtgtcgcttggtcttcaagggccgtgctgcagcattcgc 661
Query: 410 aacattgacttggtgtgcattgattttagcctgggaagttgtcgacatgagaagatcatt 469
||| |||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||||
Sbjct: 662 aactatgacgtggtgtgcattaattttagcttgggaggttgttgacatgagaagatcatt 721
Query: 470 ctttatgatgaa 481
||| ||||||||
Sbjct: 722 cttcatgatgaa 733
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,213
Number of Sequences: 1807
Number of extensions: 17213
Number of successful extensions: 401
Number of sequences better than 1.0e-20: 2
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)