BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF09FM1.SCF screened BAC_end
(1062 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 611 e-174
>3x_Contig1649
Length = 14442
Score = 611 bits (308), Expect = e-174
Identities = 369/387 (95%), Gaps = 2/387 (0%)
Strand = Plus / Plus
Query: 116 ctcatctccaatgtacttttctatagagtccattgattcagaattatcttcggcttcacc 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13162 ctcatctccaatgtacttttctatagagtccattgattcagaattatcttcggcttcacc 13221
Query: 176 atatttctctctttgctgaaattgaactgattttcgcgcattaagcatgatattctcaat 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 13222 atatttctctctttgctgaaattgaactgattttcgcgcattaagcatgatattttcaat 13281
Query: 236 ctgtgattcattttgttggatatttgacaaaaaatcgccaattgagttaatttgcagctc 295
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 13282 ctgtgattcatcatgttggatatttgacaaaaaatcgtcaattgagttaatttgcagttc 13341
Query: 296 ttgttcactacgaatggaggctttgcgtgatatgctcttcctagcagcgtcaactttcag 355
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 13342 ttgttcactacgaatggaggcttttcgtgatatgctcttcctagcagcgtcaagtttcag 13401
Query: 356 agtagagatactgcttctgttttgtaattgtgaatttctcgctaatcctgtaataccggc 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13402 agtagagatactgcttctgttttgtaattgtgaatttctcgctaatcctgtaataccgtc 13461
Query: 416 tcccatgttagtcagttctagagatttacgncggcgcacaatcatctcagctccttctaa 475
|| ||||||||||||||||||||||||||| || ||| |||||| |||||| |||||||
Sbjct: 13462 tctcatgttagtcagttctagagatttacgttggtgcaaaatcatttcagcttcttctaa 13521
Query: 476 gttttctttgctcgatatagattttgt 502
||||||||| |||||| |||||||||
Sbjct: 13522 -ttttctttgttcgata-agattttgt 13546
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,773
Number of Sequences: 1807
Number of extensions: 13773
Number of successful extensions: 96
Number of sequences better than 1.0e-20: 1
length of query: 1062
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1046
effective length of database: 10,329,639
effective search space: 10804802394
effective search space used: 10804802394
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)