BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF09RM1.SCF screened BAC_end
(1021 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 827 0.0
>3x_Contig1496
Length = 9544
Score = 827 bits (417), Expect = 0.0
Identities = 479/493 (97%), Gaps = 5/493 (1%)
Strand = Plus / Minus
Query: 72 gctttgggtaatatatttcatttttctagcaaattgcatgtttggtacaccaaattggaa 131
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8233 gctttgggtaatatatttcatttctctagcaaattgcatgtttggtacaccaaattggaa 8174
Query: 132 agagccagtttcaacgatgagaacatcaccatcattgaaataatttggaataatttcctt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8173 agagccagtttcaacgatgagaacatcaccatcattgaaataatttggaataatttcctt 8114
Query: 192 caaactcttttgagtgatactgtcattattgtcatattcacagctatggtttgatttagg 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8113 caaactcttttgagtgatactgtcattattgtcatattcacagctatggtttgatttagg 8054
Query: 252 aactggtgggtaagagaatgatagttttgacttatccaagttatcattaacgtatttaag 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8053 aactggtgggtaagagaatgatagttttgacttatccaagttatcattaacgtatttaag 7994
Query: 312 caccgatacaaaattagcttcttcgacagtacttgcatttttatccttgatatcaatgaa 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7993 caccgatacaaaattagcttcttcgacagtacttgcatttttatccttgatatcaatgaa 7934
Query: 372 ttgtatgatgttatttgacaattcgataattctggcattctcgttgaagtggaatgagta 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7933 ttgtatgatgttatttgacaattcgataattctggcattctcgttgaagtggaatgagta 7874
Query: 432 atacccacagttgatttcatttttggccggaccaaagtgcataatcaatatctcttataa 491
||||||||||||||||||||||||||||||||||||||||| |||||| ||| | || ||
Sbjct: 7873 atacccacagttgatttcatttttggccggaccaaagtgcaaaatcaa-atcac-tagaa 7816
Query: 492 tccacagttgcttgcatttgctttgcctggttcagcagctttgtttatgaccccaatatt 551
||||||||||||||||||| ||||||||| ||||||| ||||| | | ||||| ||||||
Sbjct: 7815 tccacagttgcttgcattt-ctttgcctgtttcagcacctttg-taaagacccaaatatt 7758
Query: 552 taaggattgcgtt 564
| |||||||||||
Sbjct: 7757 t-aggattgcgtt 7746
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,039
Number of Sequences: 1807
Number of extensions: 17039
Number of successful extensions: 164
Number of sequences better than 1.0e-20: 1
length of query: 1021
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1005
effective length of database: 10,329,639
effective search space: 10381287195
effective search space used: 10381287195
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)