BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF11FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 1067 0.0
>3x_Contig1224
Length = 5948
Score = 1067 bits (538), Expect = 0.0
Identities = 563/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Plus
Query: 86 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 3953
Query: 146 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 4013
Query: 206 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 4073
Query: 266 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgatttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgatttt 4133
Query: 326 ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 4193
Query: 386 tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 4253
Query: 446 caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 4313
Query: 506 tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataat 4373
Query: 566 cgcagaaatggtaatcaagcacaagaatgtacctgcccacgacctaactgaaaataaaac 625
|||||| ||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||
Sbjct: 4374 cgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaac 4433
Query: 626 gaataacttagggtcatttgtccaaagttt 655
|||||||| ||||||| |||||||||||||
Sbjct: 4434 gaataactcagggtca-ttgtccaaagttt 4462
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9656
Number of Sequences: 1807
Number of extensions: 9656
Number of successful extensions: 145
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)