BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF12FM1.SCF screened BAC_end
(1230 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1500 519 e-147
>3x_Contig1500
Length = 9720
Score = 519 bits (262), Expect = e-147
Identities = 331/354 (93%)
Strand = Plus / Plus
Query: 116 ttccagttcacgtttcgaagagtaatattcgataaattgtcctgagatcaacgcaaacag 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 ttccagttcacgtttcgaagagtaatattcgataaattgtcctgagatcaacgcaaacag 1334
Query: 176 cagtaacacaaatatttattggagtttttcgatatgccaagtgtcaaatttatagttttg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 cagtaacacaaatatttattggagtttttcgatatgccaagtgtcaaatttatagttttg 1394
Query: 236 ctgggcgttttttttgtgttctgcagccagggctcatgtaaggactcggattcataccat 295
||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1395 ctgtgcgttttgccagtgttcttcagccagggctcatgtaaggactcggattcataccat 1454
Query: 296 aatgtgcattctcttaagcatgccaaggcacagggaaaacaaattgaagggaaagaaggg 355
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1455 aatgtgcattctcttaagcatgccaaggcacagggaaaacaaattgaaggtaaagaagtc 1514
Query: 356 cgacatttatgccgaggaggggggactagcaaatgccccaacggagacggaatggaagag 415
|||||||| ||| ||||||| ||| |||||| |||||||||||||||||||| || |
Sbjct: 1515 gcacatttattccgtagagggggtacttgcaaattccccaacggagacggaatggtagcg 1574
Query: 416 gagcaaacaagggggaaaaatgcgggatgggccatgcataaagaccaagaatgt 469
| |||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1575 gtgcaaaccagtgggaaaaatgcgggatgggccatgcataatgaccaagaatgt 1628
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4717
Number of Sequences: 1807
Number of extensions: 4717
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 1230
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1214
effective length of database: 10,329,639
effective search space: 12540181746
effective search space used: 12540181746
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)