BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZF12RM1.SCF screened BAC_end
(1047 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 678 0.0
>3x_Contig1640
Length = 15521
Score = 678 bits (342), Expect = 0.0
Identities = 381/393 (96%), Gaps = 1/393 (0%)
Strand = Plus / Plus
Query: 77 cggcatacttatgacattatctaccagagaccggacaacataataggcatacaatctgat 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13399 cggcatacttatgacattatctaccagagaccggacaacataataggcatacaatctgat 13458
Query: 137 gaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattcttatc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13459 gaccaaaaacgcttcctattggccagtaagctcattaaagcgtctgtctctattcttatc 13518
Query: 197 tggcgtctaattgatgtagtggtttccccttgtctctgattcgtgacttatttatagggc 256
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 13519 tggcgtctaattgatgtagtggtttccccttgtctctgattcgtgactcaag-atagggc 13577
Query: 257 agacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtattattca 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13578 agacagccacatagaagcaatcaataaccgaccgatgcttcgctgtcctagtattattca 13637
Query: 317 atagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcattttac 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13638 atagggattggcgtagaaaatcgcacggaagcagcagcgaaaaaaagcctttcattttac 13697
Query: 377 gtagtttttctggcgtttntgtgttgcgaatttgacctttttatttacttgtcttgggtt 436
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |||
Sbjct: 13698 gtagtttttctggcgtttttttgttgtgaatttgacctttttatttacttgtcttgtgtt 13757
Query: 437 ttttttttaacgttgctttgccacagagaagca 469
||||| | |||||| || |||||||||||||||
Sbjct: 13758 tttttctcaacgttcctctgccacagagaagca 13790
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,498
Number of Sequences: 1807
Number of extensions: 16498
Number of successful extensions: 415
Number of sequences better than 1.0e-20: 1
length of query: 1047
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1031
effective length of database: 10,329,639
effective search space: 10649857809
effective search space used: 10649857809
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)