BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZG01FM1.SCF screened BAC_end
         (875 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1628                                                        1384   0.0  

>3x_Contig1628 
          Length = 12927

 Score = 1384 bits (698), Expect = 0.0
 Identities = 764/778 (98%), Gaps = 6/778 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   ggaagtcttcgaaacaagatacagaagattggtagagacaagacaacaacgttatggttc 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4544 ggaagtcttcgaaacaagatacagaagattggtagagacaagacaacaacgttatggttc 4485

                                                                        
Query: 147  cttcgactacgatccagaagaagaattacaacgttacaaaagttacagagaacaattaaa 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4484 cttcgactacgatccagaagaagaattacaacgttacaaaagttacagagaacaattaaa 4425

                                                                        
Query: 207  gccattcgttgtcgattcggttaacttcatgcacgacgcaatcaagaaaaataagaagat 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4424 gccattcgttgtcgattcggttaacttcatgcacgacgcaatcaagaaaaataagaagat 4365

                                                                        
Query: 267  tcttgtcgaaggtgccaatgctctaatgctagacattgacttcggaacttatccgtatgt 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4364 tcttgtcgaaggtgccaatgctctaatgctagacattgacttcggaacttatccgtatgt 4305

                                                                        
Query: 327  taccagttctaacactggtattggtggtgtcatcacgggtctaggtattcctccacgtac 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4304 taccagttctaacactggtattggtggtgtcatcacgggtctaggtattcctccacgtac 4245

                                                                        
Query: 387  tatcaaggaagtgtttggtgttgtcaaggcttacactactagagtcggtgaaggtccatt 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4244 tatcaaggaagtgtttggtgttgtcaaggcttacactactagagtcggtgaaggtccatt 4185

                                                                        
Query: 447  cccgaccgaacaactaaacgaagacggtgaaaaacttcaaaatattggtgcggaattcgg 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4184 cccgaccgaacaactaaacgaagacggtgaaaaacttcaaaatattggtgcggaattcgg 4125

                                                                        
Query: 507  tgtcaccactggtcgtaagcgtcgttgtgggtggttagatctggttgttctgaaatattc 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4124 tgtcaccactggtcgtaagcgtcgttgtgggtggttagatctggttgttctgaaatattc 4065

                                                                        
Query: 567  caatttgatcaatggctatacctctttgaacattacaaaacttgatgttttagatacctt 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4064 caatttgatcaatggctatacctctttgaacattacaaaacttgatgttttagatacctt 4005

                                                                        
Query: 627  caaagagattaaggtcggtgtttcctactctgttgatggtaagaagctggaatctttccc 686
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4004 caaagagattaaggtcggtgtttcctactctgttgatggtaagaagctagaatctttccc 3945

                                                                        
Query: 687  tgaggacttattgactttagcaaaggtcgaagttgaatatgtcacctttgccaggctggg 746
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 3944 tgaggacttattgactttagcaaaggtcgaagttgaatatgtcacc-ttgccaggctggg 3886

                                                                        
Query: 747  aagaagatatcagcaaaattcccaactttgaaggatctcccagaaaatgctccaaaatta 806
            |||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||
Sbjct: 3885 aagaagatatcagcaaaattaccaactatgaa-gatctcccagaaaatgct-caaaaata 3828

                                                                      
Query: 807  tctaaaggtcatatgaagacattgtttgaagtttcaatccaatgggttgggcactggt 864
            ||||||| |||| ||||||| ||  |||||||| |||||||||||| |||||||||||
Sbjct: 3827 tctaaagttcat-tgaagac-ttcgttgaagttccaatccaatggg-tgggcactggt 3773


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6325
Number of Sequences: 1807
Number of extensions: 6325
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 875
length of database: 10,358,551
effective HSP length: 16
effective length of query: 859
effective length of database: 10,329,639
effective search space: 8873159901
effective search space used: 8873159901
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)