BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZG01RM1.SCF screened BAC_end
         (859 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1381                                                        1558   0.0  

>3x_Contig1381 
          Length = 7318

 Score = 1558 bits (786), Expect = 0.0
 Identities = 807/812 (99%), Gaps = 2/812 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   tcaccttttctcgttcctgacttatacctagtttcagttttttttttctttcttctttct 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3744 tcaccttttctcgttcctgacttatacctagtttcagttttttttttctttcttctttct 3685

                                                                        
Query: 109  ttcttcttccgctttagtttgagcgctgacacttcaggtcacgtgacgagaatttttgga 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 ttcttcttccgctttagtttgagcgctgacacttcaggtcacgtgacgagaatttttgga 3625

                                                                        
Query: 169  ccctcgtacatgtttagcatgacacaaaacgtgataggacttaaggaagagcatcgtact 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 ccctcgtacatgtttagcatgacacaaaacgtgataggacttaaggaagagcatcgtact 3565

                                                                        
Query: 229  atacccctgcgagcatctaatatggcgggaaaactgtatcagtagacaaacgggaactgt 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 atacccctgcgagcatctaatatggcgggaaaactgtatcagtagacaaacgggaactgt 3505

                                                                        
Query: 289  tagctttactatatttacatacatatagttcatatgtgctttgcgatcaacggtaatttt 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 tagctttactatatttacatacatatagttcatatgtgctttgcgatcaacggtaatttt 3445

                                                                        
Query: 349  ttgtaagtaaaagcagccaagacgaaatcaagcagatagtgacatatttcattatataaa 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 ttgtaagtaaaagcagccaagacgaaatcaagcagatagtgacatatttcattatataaa 3385

                                                                        
Query: 409  atctcgatatgataacgatgtatttctcacacaagaagatatcagccatcgttgtataaa 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 atctcgatatgataacgatgtatttctcacacaagaagatatcagccatcgttgtataaa 3325

                                                                        
Query: 469  gaaaccaagaggcgagcgtataatacacgctggacccagttcgctactgaatacgcatca 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 gaaaccaagaggcgagcgtataatacacgctggacccagttcgctactgaatacgcatca 3265

                                                                        
Query: 529  ttgcagtataaaatggagatcaagagcaaactggacggtattgaacctacacaggtagat 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 ttgcagtataaaatggagatcaagagcaaactggacggtattgaacctacacaggtagat 3205

                                                                        
Query: 589  agagccattttagagagtcaaaaagcaaaaagtggttcctatagtccatattcaaaattt 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 agagccattttagagagtcaaaaagcaaaaagtggttcctatagtccatattcaaaattt 3145

                                                                        
Query: 649  agggtcggatgttgcatactgac-anagatggtacttatatcacaggaagcaatgtggag 707
            ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 3144 agggtcggatgttgcatactgacaaaagatggtacttatatcacaggaagcaatgtggag 3085

                                                                        
Query: 708  aatgctacgtatggagccaccatatgtgcagaaagagctgctatcgtgaaagctgtcaca 767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 aatgctacgtatggagccaccatatgtgcagaaagagctgctatcgtgaaagctgtcaca 3025

                                                                        
Query: 768  agcttccacagagcagattgggtttgtgtcgctatcaacagcgatatgagagat-attac 826
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3024 agctcccacagagcagattgggtttgtgtcgctatcaacagcgatatgagagataattac 2965

                                            
Query: 827  attccgncatgtggaatctgtcggcaaacgat 858
            |||||| |||||||||||||||||||||||||
Sbjct: 2964 attccgccatgtggaatctgtcggcaaacgat 2933


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7001
Number of Sequences: 1807
Number of extensions: 7001
Number of successful extensions: 111
Number of sequences better than 1.0e-20: 1
length of query: 859
length of database: 10,358,551
effective HSP length: 16
effective length of query: 843
effective length of database: 10,329,639
effective search space: 8707885677
effective search space used: 8707885677
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)