BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG02RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1690 1402 0.0
>3x_Contig1690
Length = 13018
Score = 1402 bits (707), Expect = 0.0
Identities = 815/843 (96%), Gaps = 6/843 (0%)
Strand = Plus / Minus
Query: 48 aacaaaaaatgctggttgtcgaaaaaaaatacaaacaaaccctttgaacattgggaattt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3034 aacaaaaaatgctggttgtcgaaaaaaaatacaaacaaaccctttgaacattgggaattt 2975
Query: 108 ttaatagattgaacccagcacatttgaaggaaagaaaaccttttaaaaagtttacccgga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2974 ttaatagattgaacccagcacatttgaaggaaagaaaaccttttaaaaagtttacccgga 2915
Query: 168 aattgaacagtttcttttttcttcccatctggatctggaaagttggaaaatttatagatt 227
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2914 aattgaacagtttcttttttcttcccatctggatctggaaagttggaaaattta-agatt 2856
Query: 228 gaacatagtcaaagaagcgatgagatgagatgagatgagatgagatgagatgagttcaat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2855 gaacatagtcaaagaagcgatgagatgagatgagatgagatgagatgagatgagttcaat 2796
Query: 288 gagctttcacatatataatttcttcaacaccgataagtgctccttttgttttcactgtag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2795 gagctttcacatatataatttcttcaacaccgataagtgctccttttgttttcactgtag 2736
Query: 348 aaagagaggttgaaaaggtcttctattcaaatgccggataatcagtttagaatcattgtg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2735 aaagagaggttgaaaaggtcttctattcaaatgccggataatcagtttagaatcattgtg 2676
Query: 408 ggttcttacgaacacaatctattatgtttatctttgaacttatcgttaacccaaccgcta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2675 ggttcttacgaacacaatctattatgtttatctttgaacttatcgttaacccaaccgcta 2616
Query: 468 ttcacgccaatatttcattttcaagcgcactcattgagtgtgaaatgtctagacatatca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2615 ttcacgccaatatttcattttcaagcgcactcattgagtgtgaaatgtctagacatatca 2556
Query: 528 aagagatacctagtatcaggatcgaacgatgaaaatataagaatctacgatttacaaaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2555 aagagatacctagtatcaggatcgaacgatgaaaatataagaatctacgatttacaaaaa 2496
Query: 588 cgtaaagaattggggacgttgttaggacatcaaggttccattacgaatttgagattctca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2495 cgtaaagaattggggacgttgttaggacatcaaggttccattacgaatttgagattctca 2436
Query: 648 agaggttaagatgccgatggccaggatatccaactcaataaatggctactatctgcatct 707
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2435 agaggtaaagatgccgatggccaggatatccaactcaataaatggctactatctgcatct 2376
Query: 708 gaggatcattaaataatactttggagagtgaaagactgtgaaaatttctgaacctttgaa 767
||||||||| |||||||| | ||||||||||||||||| ||||||||| ||||||| |
Sbjct: 2375 gaggatcataaaataatagtatggagagtgaaagactgggaaaatttcggaaccttgaag 2316
Query: 768 ggccatactgccaggatcaacgaatttcgattttcattctttgaacataattgctagcca 827
|||||||||||||||||||||| |||||||| ||||| ||| ||||| | |||| || ||
Sbjct: 2315 ggccatactgccaggatcaacg-atttcgatattcatccttcgaacagagttgc-agtca 2258
Query: 828 gtgtaaatgaagaatccttcgatacaattattggaacctcatgaactgtttaaaaggcag 887
|||||| ||||| ||| |||||| |||| |||||||||||| |||||| | |||||||
Sbjct: 2257 gtgtaagtgaag-atcattcgatcagatta-tggaacctcatg-actgttaagaaggcag 2201
Query: 888 gtg 890
|||
Sbjct: 2200 gtg 2198
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,308
Number of Sequences: 1807
Number of extensions: 10308
Number of successful extensions: 1002
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)