BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG03FM1.SCF screened BAC_end
(990 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1649 888 0.0
>3x_Contig1649
Length = 14442
Score = 888 bits (448), Expect = 0.0
Identities = 535/560 (95%), Gaps = 3/560 (0%)
Strand = Plus / Plus
Query: 128 cacatttttcctatttatgattgattctctaaaatctaaaacaacaaaataaagggaagc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2039 cacatttttcctatttatgattgattctctaaaatctaaaacaacaaaataaagggaagc 2098
Query: 188 cttgtaatcacaacaaaaccaaattagcgaagaataaaaatcctccttcaataatcgttt 247
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2099 cttgtaatcacaacaaaaccaaataagcgaagaataaaaatcctccttcaataatcgttt 2158
Query: 248 ggccttattttgtctttatattaccatagtctatattagttcgaggtgaacctccttcca 307
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2159 ggccttattttgacaagatattaccatagtctatattagttcgaggtgaacctccttcca 2218
Query: 308 catgatcaactagtactgtacatcagcacattagattagtgaaccatctcgcatgtccga 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2219 catgatcaactagtactgtacatcagcacattagattagtgaaccatctcgcatgtccga 2278
Query: 368 acccatcaattcaacgggagaagataataatccattttggagaagatggatcccaggaac 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2279 acccatcaattcaacgggagaagataataatccattttggagaagatggatcccaggaac 2338
Query: 428 taatgcttcagaagaaaacagtcaagatactcctactaattcgtcttctgaacaccagga 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2339 taatgcttcagaagaaaacagtcaagatactcctactaattcgtcttctgaacaccagga 2398
Query: 488 cgaaggatggctgaaaaggtatataccatcttggttctccaatcaagaaaggttataaat 547
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct: 2399 cgaaggatggctgaaaaggtatataccagcttggttctccaatcaagaaagtttagaaat 2458
Query: 548 cagcgacagttacattataccattagcttaccaaaaaactaattaaaatatttggaaatg 607
||||||||| ||||| ||||||| ||||||||||||||| |||||||||||| | |||||
Sbjct: 2459 cagcgacag-tacatcataccatcagcttaccaaaaaacaaattaaaatattggaaaatg 2517
Query: 608 aaccagtacaaggaatacttaaaggtactgatacatgttgttgggtttaatgaaaacttt 667
|| ||| ||||||||||||||||| |||||||||||| | ||||||||| |||||||
Sbjct: 2518 aagcagagcaaggaatacttaaaggacatgatacatgttgct-ggtttaatg-aaacttt 2575
Query: 668 gaatattaaattacttgatt 687
||||| ||||||||| ||||
Sbjct: 2576 gaataataaattactcgatt 2595
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7739
Number of Sequences: 1807
Number of extensions: 7739
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 990
length of database: 10,358,551
effective HSP length: 16
effective length of query: 974
effective length of database: 10,329,639
effective search space: 10061068386
effective search space used: 10061068386
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)