BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZG03RM1.SCF screened BAC_end
         (1046 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1496                                                         839   0.0  

>3x_Contig1496 
          Length = 9544

 Score =  839 bits (423), Expect = 0.0
 Identities = 474/487 (97%), Gaps = 3/487 (0%)
 Strand = Plus / Minus

                                                                        
Query: 83   aaagttgcggcaggagtagcggcactatntctcatttgtatgctcttcgtccaaacataa 142
            |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 1733 aaagttgcggcaggagtagcggcactat-tctcatttgtatgctctt-gtccaaacataa 1676

                                                                        
Query: 143  gagtagggaaaacaaatgccggcacacttccgtactttggtagtttatatgttccttggt 202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1675 gagtagggaaaacaaatgccggcacacttccgtactttggtagtttatatgttccttggt 1616

                                                                        
Query: 203  tgatatcactttgtaacctctttgacgcattaagttccataggagtgaattcctttttta 262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1615 tgatatcactttgtaacctctttgacgcattaagttccataggagtgaattcctttttta 1556

                                                                        
Query: 263  catcaaattgtgtattgggctttgagcttgaacttggcgtagttagcgagctttttaaat 322
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1555 catcaaattgtgtattgggctttgagcttgaacttggcgtagtttgcgagctttttaaat 1496

                                                                        
Query: 323  tatttaaacaatccttggttcccctagatgaccgattttgccaattggactgtggatcct 382
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1495 tatttaaacaatccttggttcccctagatgaccgattttgccaattggactttggatcct 1436

                                                                        
Query: 383  gtgatatggtcgacagcacatgtccataatgcccgagtgcttccgttctgttacctgaca 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1435 gtgatatggtcgacagcacatgtccataatgcccgagtgcttccgttctgttacctgaca 1376

                                                                        
Query: 443  agttactattacttccaactggaacatccgtgttgttaattgccgcaggaatattgctgt 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || 
Sbjct: 1375 agttactattacttccaactggaacatccgtgttgttaattgccgcaggaatagtgttga 1316

                                                                        
Query: 503  aatcatttccataattaatacttggtctaacttgagggtagattgactacaacgtgcccc 562
            ||||||||||||||||||||||||||||| ||||| ||| ||| |||| || ||||||||
Sbjct: 1315 aatcatttccataattaatacttggtctagcttga-ggttgatcgactccaccgtgcccc 1257

                   
Query: 563  ataatat 569
            |||||||
Sbjct: 1256 ataatat 1250


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7662
Number of Sequences: 1807
Number of extensions: 7662
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 1046
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1030
effective length of database: 10,329,639
effective search space: 10639528170
effective search space used: 10639528170
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)