BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZG03RM1.SCF screened BAC_end (1046 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1496 839 0.0 >3x_Contig1496 Length = 9544 Score = 839 bits (423), Expect = 0.0 Identities = 474/487 (97%), Gaps = 3/487 (0%) Strand = Plus / Minus Query: 83 aaagttgcggcaggagtagcggcactatntctcatttgtatgctcttcgtccaaacataa 142 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct: 1733 aaagttgcggcaggagtagcggcactat-tctcatttgtatgctctt-gtccaaacataa 1676 Query: 143 gagtagggaaaacaaatgccggcacacttccgtactttggtagtttatatgttccttggt 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1675 gagtagggaaaacaaatgccggcacacttccgtactttggtagtttatatgttccttggt 1616 Query: 203 tgatatcactttgtaacctctttgacgcattaagttccataggagtgaattcctttttta 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1615 tgatatcactttgtaacctctttgacgcattaagttccataggagtgaattcctttttta 1556 Query: 263 catcaaattgtgtattgggctttgagcttgaacttggcgtagttagcgagctttttaaat 322 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1555 catcaaattgtgtattgggctttgagcttgaacttggcgtagtttgcgagctttttaaat 1496 Query: 323 tatttaaacaatccttggttcccctagatgaccgattttgccaattggactgtggatcct 382 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1495 tatttaaacaatccttggttcccctagatgaccgattttgccaattggactttggatcct 1436 Query: 383 gtgatatggtcgacagcacatgtccataatgcccgagtgcttccgttctgttacctgaca 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1435 gtgatatggtcgacagcacatgtccataatgcccgagtgcttccgttctgttacctgaca 1376 Query: 443 agttactattacttccaactggaacatccgtgttgttaattgccgcaggaatattgctgt 502 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1375 agttactattacttccaactggaacatccgtgttgttaattgccgcaggaatagtgttga 1316 Query: 503 aatcatttccataattaatacttggtctaacttgagggtagattgactacaacgtgcccc 562 ||||||||||||||||||||||||||||| ||||| ||| ||| |||| || |||||||| Sbjct: 1315 aatcatttccataattaatacttggtctagcttga-ggttgatcgactccaccgtgcccc 1257 Query: 563 ataatat 569 ||||||| Sbjct: 1256 ataatat 1250 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7662 Number of Sequences: 1807 Number of extensions: 7662 Number of successful extensions: 69 Number of sequences better than 1.0e-20: 1 length of query: 1046 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1030 effective length of database: 10,329,639 effective search space: 10639528170 effective search space used: 10639528170 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)