BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG04FM1.SCF screened BAC_end
(894 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 950 0.0
>3x_Contig1571
Length = 13536
Score = 950 bits (479), Expect = 0.0
Identities = 541/559 (96%), Gaps = 2/559 (0%)
Strand = Plus / Minus
Query: 85 atctaaaacttgcttaccacctggcttaatcacgttagtgagctctaagagtctgtcact 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atctaaaacttgcttaccacctggcttaatcacgttagtgagctctaagagtctgtcact 576
Query: 145 gagtgtagatttaccatgatcaacatgagccactatagaaaagttacgatatctttcaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gagtgtagatttaccatgatcaacatgagccactatagaaaagttacgatatctttcaat 516
Query: 205 tggaatggcatttatcctctcttgtaatgaatgattacttctaacttgttgaaaggcata 264
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tggaatggcatcgatcctctcttgtaatgaatgattacttctaacttgttgaaaggcata 456
Query: 265 cctcacatgtcgaagcaacctcctattgaacataattatcgggtctgaaatttagaactc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cctcacatgtcgaagcaacctcctattgaacataattatcgggtctgaaatttagaactc 396
Query: 325 gtagctctataagcctttctctttcgtctatcgtttaacgtctagaatttatgtttatag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtagctctataagcctttctctttcgtctatcgtttaacgtctagaatttatgtttatag 336
Query: 385 atcttccagtcattaaacattgttggcaacgaattgtttaaatttgatgtttatggccgt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 atcttccagtcattaaacattgttggcaacgaattgtttaaatttgatgtttatggccgt 276
Query: 445 tcagatctaaagttcaactttaactcatacatacaaagggaataacaaataaacgtgata 504
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 275 tcagatctaaagttcaactttaactcatacatacaaagggaataacaaaaaaacgtgata 216
Query: 505 gcaagctaatcctcgggacgaattttgcaatgaaactaaaactaagtattaaagccggga 564
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct: 215 gcaagctaatcctcgggacgaattttgcaatgaaactaaaactaagtattcaagcaggta 156
Query: 565 cttgagactactcatcgttcaggacaac-tttataaccggtttccaacctacgaataaca 623
|| |||||||||| |||||||||||| || |||| |||| ||||| ||||||| ||||
Sbjct: 155 ctgaggactactcattgttcaggacaacgttgataa-cggtgtccaaactacgaaaaaca 97
Query: 624 tgttttttaggatttacct 642
||| ||||| |||||||||
Sbjct: 96 tgtattttaagatttacct 78
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7069
Number of Sequences: 1807
Number of extensions: 7069
Number of successful extensions: 700
Number of sequences better than 1.0e-20: 1
length of query: 894
length of database: 10,358,551
effective HSP length: 16
effective length of query: 878
effective length of database: 10,329,639
effective search space: 9069423042
effective search space used: 9069423042
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)