BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG05FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig226 609 e-174
3x_Contig914 458 e-128
>3x_Contig226
Length = 1863
Score = 609 bits (307), Expect = e-174
Identities = 315/318 (99%)
Strand = Plus / Minus
Query: 85 ccttgacgaccaagttcttaccacccaattccttggcaatcttggtagcctcatcgacgg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccttgacgaccaagttcttaccacccaattccttggcaatcttggtagcctcatcgacgg 263
Query: 145 tatgagcagctgcaccttttggagtaccaacgccgtattgtctcaacagttcagccgaac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatgagcagctgcaccttttggagtaccaacgccgtattgtctcaacagttcagccgaac 203
Query: 205 ggtattcttgtanggacaagtttctaacttgttgacgaacaacagaagaagacttgtgca 264
||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggtattcgtggatggacaagtttctaacttgttgacgaacaacagaagaagacttgtgca 143
Query: 265 aacagcttcttaatttgtaagcttgcgacaacatagtgtatgataattctatagtagttc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aacagcttcttaatttgtaagcttgcgacaacatagtgtatgataattctatagtagttc 83
Query: 325 acggagtgagagaagacagtttcgttaagccaaaaaaaaaaagacaccgtttatattatg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 acggagtgagagaagacagtttcgttaagccaaaaaaaaaaagacaccgtttatattatg 23
Query: 385 tattatgtttcgtatctt 402
||||||||||||||||||
Sbjct: 22 tattatgtttcgtatctt 5
>3x_Contig914
Length = 2833
Score = 458 bits (231), Expect = e-128
Identities = 274/283 (96%), Gaps = 4/283 (1%)
Strand = Plus / Plus
Query: 371 ccgtttatattatgtattatgtttcgtatcttctttccaatctcctattctttatctggg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 ccgtttatattatgtattatgtttcgtatcttctttccaatctcctattctttatctggg 73
Query: 431 gatctggagtttataaatgaatcaaattaaagaacgaaaaaacacagacggtttaaccaa 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gatctggagtttataaatgaatcaaattaaagaacgaaaaaacacagacggtttaaccaa 133
Query: 491 aaaatcctttaatatcaaacaaaaagggcgaaaaaaaaaaaactcgatagtttgacagaa 550
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 134 aaaatcctttaatatcaaacaaaaagggcgaagaaaaaaaaactcgatag-ttgacagaa 192
Query: 551 tatggtgctataaagtatcgatgcaatttcctgaagcaagtttttaagcttggaatgaat 610
|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 193 tatggtgctataaagtatcgatgcaa-ttcctgaagc-aggttttaagcttggaatgaat 250
Query: 611 tggcgtatgtccagcaattaatcttggaatgtcttggattttg 653
||||||| ||||||||| |||||||| ||||||||| ||||||
Sbjct: 251 tggcgtaggtccagcaa-taatcttgtaatgtcttgtattttg 292
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,304
Number of Sequences: 1807
Number of extensions: 18304
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 2
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)