BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG05RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1184 985 0.0
>3x_Contig1184
Length = 5183
Score = 985 bits (497), Expect = 0.0
Identities = 571/589 (96%), Gaps = 5/589 (0%)
Strand = Plus / Minus
Query: 48 acaactgaaaagttttaacagtgcacgtttctttttgatatttaagctgcaacagagaaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2644 acaactgaaaagttttaacagtgcacgtttctttttgatatttaagctgcaacagagaaa 2585
Query: 108 agagacattttgaccgcgatgagattaaggtaccattacctcattctcaaatatacgtgc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2584 agagacattttgaccgcgatgagattaaggtaccattacctcattctcaaatatacgtgc 2525
Query: 168 gattcgctaaacataactacgttgactgactcataggaaaggcccatcattagatggatg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2524 gattcgctaaacataactacgttgactgactcataggaaaggcccatcattagatggatg 2465
Query: 228 ctcctaatgacgatagaatgcttgaatatgtgaagattgtagatttcagtgacttagagt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2464 ctcctaatgacgatagaatgcttgaatatgtgaagattgtagatttcagtgacttagagt 2405
Query: 288 catagtattccagttcaacataaacaagacaaaaactaacgtccattggcgtttcttact 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2404 catagtattccagttcaacataaacaagacaaaaactaacgtccattggcgtttcttact 2345
Query: 348 tgaattttcctgttcagcatactatatgaagcttgcatacttaccatgttgggtcctact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2344 tgaattttcctgttcagcatactatatgaagcttgcatacttaccatgttgggtcctact 2285
Query: 408 ggacactgtagttagatggcagaagattagattgtaataagaaaatcacgtttgattatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2284 ggacactgtagttagatggcagaagattagattgtaataagaaaatcacgtttgattatg 2225
Query: 468 aatgcacgtga-caaaagaactaaacatagtgctcgagagtttagtactttcaaaaaaaa 526
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2224 aatgcacgtgatcaaaagaactaaacatagtgctcgagagtttagtactttgaaaaaaaa 2165
Query: 527 agcttccgttggcgtaatggcaacgcgtttgacttctaat-aaaaaattgtgggttcgac 585
|||| ||| ||||||||||| || | || ||||||||||| | || ||||| | || ||
Sbjct: 2164 agctcccg-tggcgtaatgggaaggggtgtgacttctaatcagaagattgt-gtttttac 2107
Query: 586 ccccaccgtgagtgcctttaatttttttaaattttttttacatctctgg 634
|||||||||||||| |||| |||||||||| ||||||||||||||||||
Sbjct: 2106 ccccaccgtgagtg-cttttatttttttaatttttttttacatctctgg 2059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9289
Number of Sequences: 1807
Number of extensions: 9289
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)