BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZG06FM1.SCF screened BAC_end
         (1036 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1665                                                         321   2e-87

>3x_Contig1665 
          Length = 15710

 Score =  321 bits (162), Expect = 2e-87
 Identities = 233/254 (91%), Gaps = 2/254 (0%)
 Strand = Plus / Plus

                                                                        
Query: 110  ttgttgatgagttgtgcgagcatttcgttcatttagacaaggacgctaatattaagttta 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2820 ttgttgatgagttgtgcgagcatttcgttcatttagacaaggacgctaatattaagttta 2879

                                                                        
Query: 170  ccagattcataagaaccactgatctcatatcatgtaaataatgggaaaa-agctctggaa 228
            |||||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||
Sbjct: 2880 ccagattcataagaaccactgatc-cagatcatgtaaataatgtgaaaagagctctggaa 2938

                                                                        
Query: 229  cctatgctacattttttttttcttttataagggggagcataaaggctggtattctgtttc 288
            ||||||||||| |      | | |||||||||||||||||||||||||||||||||||||
Sbjct: 2939 cctatgctacaataacgggtacatttataagggggagcataaaggctggtattctgtttc 2998

                                                                        
Query: 289  tgatgagacattttatccatatacgatatatttaaagctgactttcgacggcccaccaat 348
            ||||||||||||||||||| |||||| |   |||||| ||||| ||||||| ||||||||
Sbjct: 2999 tgatgagacattttatccagatacgaaaatcttaaagttgactatcgacggtccaccaat 3058

                          
Query: 349  accatatgacggta 362
            ||||||||||||||
Sbjct: 3059 accatatgacggta 3072


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,523
Number of Sequences: 1807
Number of extensions: 11523
Number of successful extensions: 244
Number of sequences better than 1.0e-20: 1
length of query: 1036
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1020
effective length of database: 10,329,639
effective search space: 10536231780
effective search space used: 10536231780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)