BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC4ZG06FM1.SCF screened BAC_end (1036 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1665 321 2e-87 >3x_Contig1665 Length = 15710 Score = 321 bits (162), Expect = 2e-87 Identities = 233/254 (91%), Gaps = 2/254 (0%) Strand = Plus / Plus Query: 110 ttgttgatgagttgtgcgagcatttcgttcatttagacaaggacgctaatattaagttta 169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2820 ttgttgatgagttgtgcgagcatttcgttcatttagacaaggacgctaatattaagttta 2879 Query: 170 ccagattcataagaaccactgatctcatatcatgtaaataatgggaaaa-agctctggaa 228 |||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||||| Sbjct: 2880 ccagattcataagaaccactgatc-cagatcatgtaaataatgtgaaaagagctctggaa 2938 Query: 229 cctatgctacattttttttttcttttataagggggagcataaaggctggtattctgtttc 288 ||||||||||| | | | ||||||||||||||||||||||||||||||||||||| Sbjct: 2939 cctatgctacaataacgggtacatttataagggggagcataaaggctggtattctgtttc 2998 Query: 289 tgatgagacattttatccatatacgatatatttaaagctgactttcgacggcccaccaat 348 ||||||||||||||||||| |||||| | |||||| ||||| ||||||| |||||||| Sbjct: 2999 tgatgagacattttatccagatacgaaaatcttaaagttgactatcgacggtccaccaat 3058 Query: 349 accatatgacggta 362 |||||||||||||| Sbjct: 3059 accatatgacggta 3072 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,523 Number of Sequences: 1807 Number of extensions: 11523 Number of successful extensions: 244 Number of sequences better than 1.0e-20: 1 length of query: 1036 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1020 effective length of database: 10,329,639 effective search space: 10536231780 effective search space used: 10536231780 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)