BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG08FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1543 882 0.0
>3x_Contig1543
Length = 9648
Score = 882 bits (445), Expect = 0.0
Identities = 525/547 (95%), Gaps = 6/547 (1%)
Strand = Plus / Plus
Query: 88 agacgagaaatagctctccatttcacattctttcttctgatcaccagacgattcaacgca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7522 agacgagaaatagctctccatttcacattctttcttctgatcaccagacgattcaacgca 7581
Query: 148 gggtataccgtacacctgagcgtgttttatttgttacccgcacttgcgtcgaatatcttc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7582 gggtataccgtacacctgagcgtgttttatttgttacccgcacttgcgtcgaatatcttc 7641
Query: 208 actaagtcgttaatttttgacatttaaacagcttcaagctgaaaaagcgacacattcaca 267
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7642 actaagtcgtcaatttccgacatttaaacagcttcaagctgaaaaagcgacacattcaca 7701
Query: 268 acaaatatattgacacaaaagcatgttgcatgtatctaacctgcagtaagttacatttac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7702 acaaatatattgacacaaaagcatgttgcatgtatctaacctgcagtaagttacatttac 7761
Query: 328 gaaaacattttaaagctgttcgatcagtggcaagcaattcataagaatcaagtttcactg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7762 gaaaacattttaaagctgttcgatcagtggcaagcaattcataagaatcaagtttcactg 7821
Query: 388 aatcatttttctctttccaagatgactgattgtaatagtacaacggagcgcagtttgacg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7822 aatcatttttctctttccaagatgactgattgtaatagtacaacggagcgcagtttgacg 7881
Query: 448 tctggattggaagcaatgtcattgaacgcaatattcccatcgaagttgaatagaa-gcat 506
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct: 7882 tctggattggaagcaatgtcattgaaggcaatatccccatcgaagttgaatagaaggcat 7941
Query: 507 aaagtcttgagcaaacctgattaattgaatgaaaatgtctgtttggattcgagagcagaa 566
|||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 7942 -aagtctcgagcaaacctgataaattgaatgaaaatgtctgtttggatcgcagagcagaa 8000
Query: 567 ggtttgggtttattccggaaaatgaaatggcaacagaaaatttgtcagtaagaaaaataa 626
| ||||| ||| | |||||||||||||| ||||||||| |||||||||||| ||| ||
Sbjct: 8001 gttttgg--ttaatacggaaaatgaaatgccaacagaaa--ttgtcagtaagataaagaa 8056
Query: 627 cgaaaac 633
|||||||
Sbjct: 8057 cgaaaac 8063
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8303
Number of Sequences: 1807
Number of extensions: 8303
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)