BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG08RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 991 0.0
>3x_Contig1485
Length = 9830
Score = 991 bits (500), Expect = 0.0
Identities = 519/524 (99%), Gaps = 1/524 (0%)
Strand = Plus / Minus
Query: 49 ttatgtacgtgaaatacggtttcagcaattagatcgtagttgatttggccagaggtgaaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9521 ttatgtacgtgaaatacggtttcagcaattagatcgtagttgatttggccagaggtgaaa 9462
Query: 109 aacttcgaatttgcagtaggtgttaaatacatgtcctcttcgttagtctctgcactatag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9461 aacttcgaatttgcagtaggtgttaaatacatgtcctcttcgttagtctctgcactatag 9402
Query: 169 ttcatttgctctctgcgaatcttgaagtttgtctcttttagtacatcatctaataaataa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9401 ttcatttgctctctgcgaatcttgaagtttgtctcttttagtacatcatctaagaaataa 9342
Query: 229 tcttgaatcgggaaagtacgtccttcaatgtgaattgattttaaatttttgaagaacgcc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9341 tcttgaatcgggaaagtacgtccttcaatgtgaattgattttaaatttttgaagaacgcc 9282
Query: 289 ttgaaaacatcaacatttacagtggcactcataagaattaatttcattcctttgactttc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9281 ttgaaaacatcaacatttacagtggcactcataagaattaatttcattcctttgactttc 9222
Query: 349 ttcaataaattcttcaataggataattattaaatctgtatctatggacctttcgtgaact 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9221 ttcaataaattcttcaataggataattattaaatctgtatctatggacctttcgtgaact 9162
Query: 409 tcatcgataacaaccacgcagtcattcaagaaagtgacatctccttgcagaatacgaaca 468
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 9161 tcatcgataacaaccacgcagtcattcaagaaagtgacatctccttgtagaatacgaaca 9102
Query: 469 agaacaccaattgtcatgaatttaatttctggtagcactttttgtcatattaacacctct 528
||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 9101 agaacaccagttgtcatgaatttaa-ttctggtagcactttttgtcagattaacacctct 9043
Query: 529 aataatataccctacttcatcaccacatttgacacaccgttcct 572
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9042 aataatataccctacttcatcaccacatttgacacaccgttcct 8999
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9473
Number of Sequences: 1807
Number of extensions: 9473
Number of successful extensions: 136
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)