BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG09FM1.SCF screened BAC_end
(1183 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1244 500 e-141
>3x_Contig1244
Length = 4689
Score = 500 bits (252), Expect = e-141
Identities = 323/347 (93%), Gaps = 1/347 (0%)
Strand = Plus / Plus
Query: 117 gcaatgatcctagcacgtctccatcttcaacttcttcctttagctcttcttcatcttcgc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2202 gcaatgatcctagcacgtctccatcttcaacttcttcctttagctcttcttcatcttcgc 2261
Query: 177 tgggattaatngaaccattgncgtcatcactgaaatcgntctccgaatcccagccgtntc 236
|| ||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||| ||
Sbjct: 2262 tgtgattaattgaaccattgtcgtcatcactgaaatcgttctccgaatcccagtcgtttc 2321
Query: 237 tcactttctttttttttagcttgaaccttctgacatctgcagaaacatcgataccttgta 296
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2322 tcactttcttttgttgtagcttgaaccttctgacatctgcagaaacatcgataccttgta 2381
Query: 297 gatcctgcaatttttcgatgtcatcgaactgtgccatttcctgtttatattgttcttctt 356
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2382 gatcctgcaattttccgatgtcatcgaactgtgccatttcctgtttataatgttcttctt 2441
Query: 357 ccaagntgtctaaatcttgcttatcccattcatcaaattccttcctaaaattcatctgcc 416
| ||| |||||| ||||||| |||||||||||||||||| | || | ||||||||||||
Sbjct: 2442 cgaagttgtctagatcttgcatatcccattcatcaaatt-catcttcaaattcatctgca 2500
Query: 417 ccatcggctttaccccttccccacaactccgcgaaaatatcaccatc 463
|||||||||||||| || ||| ||||||| |||||||||||| ||||
Sbjct: 2501 ccatcggctttaccactacccaacaactcggcgaaaatatcatcatc 2547
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,622
Number of Sequences: 1807
Number of extensions: 23622
Number of successful extensions: 2082
Number of sequences better than 1.0e-20: 1
length of query: 1183
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1167
effective length of database: 10,329,639
effective search space: 12054688713
effective search space used: 12054688713
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)