BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG09RM1.SCF screened BAC_end
(1121 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1585 392 e-109
3x_Contig1475 119 1e-26
>3x_Contig1585
Length = 11490
Score = 392 bits (198), Expect = e-109
Identities = 274/300 (91%)
Strand = Plus / Plus
Query: 75 ctttgtacttgatggntggtttatgttntcttgatgaggaagggttctcaccattcccat 134
||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 298 ctttgtacttgatggttggtttatgttttcttgatgaggaagggttctcagtattcccat 357
Query: 135 tatctcctgtcgaggctttgcggcttattgctgttacctcatgtcctccaccaatgggtc 194
||||||||||||||| |||| || |||||| ||||||||||||| |||| |||||||||
Sbjct: 358 tatctcctgtcgaggttttgtgggttattgttgttacctcatgttttccagcaatgggtc 417
Query: 195 tcggcttggagaaggctaatgtcgacgtgacggacaagccaccaaaggatgccaaatctg 254
|||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||
Sbjct: 418 tcggtttggagaaggctaatgttgacgtgatggagaagccaccaaaggatgccaaagctg 477
Query: 255 ttatattcacgtgggaagtcatcgtcgatatgcttgcctatggtgtaattattgcagcat 314
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 478 ttatattcacgtgggaagtcatcgtcgatatgcttgtctatggtgtaattattgcagcat 537
Query: 315 gttgcatggcatgtttcgccacgcgcatctatggtactgccgacggtaatctgggccgcg 374
|||||||||||||||| | |||| ||||||||||||| || |||||| |||||||||
Sbjct: 538 gttgcatggcatgttttgtcacggtaatctatggtactggtgatggtaatttgggccgcg 597
>3x_Contig1475
Length = 10676
Score = 119 bits (60), Expect = 1e-26
Identities = 208/258 (80%)
Strand = Plus / Minus
Query: 75 ctttgtacttgatggntggtttatgttntcttgatgaggaagggttctcaccattcccat 134
|||| |||||||||| ||||||||||| ||||| | ||||| ||||| |||||||
Sbjct: 8511 ctttatacttgatggttggtttatgtttcgttgataaagaaggtttctctgtgttcccat 8452
Query: 135 tatctcctgtcgaggctttgcggcttattgctgttacctcatgtcctccaccaatgggtc 194
| || |||||||| | ||| || |||||| |||||||||||| ||| | |||||||
Sbjct: 8451 tgtcacctgtcgaagtgttgtggattattgtcgttacctcatgtttcccagctatgggtc 8392
Query: 195 tcggcttggagaaggctaatgtcgacgtgacggacaagccaccaaaggatgccaaatctg 254
| || || |||||||| | ||| ||||| | ||| |||||||||||||||||||| |||
Sbjct: 8391 ttggtttagagaaggccagtgttgacgttatggaaaagccaccaaaggatgccaaggctg 8332
Query: 255 ttatattcacgtgggaagtcatcgtcgatatgcttgcctatggtgtaattattgcagcat 314
|| | ||||| ||||||||||| | |||||||||| || ||||| || || |||||||
Sbjct: 8331 ttgttttcacctgggaagtcattattgatatgcttgtatacggtgtcatcatggcagcat 8272
Query: 315 gttgcatggcatgtttcg 332
|||| |||||||||||||
Sbjct: 8271 gttgtatggcatgtttcg 8254
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,323
Number of Sequences: 1807
Number of extensions: 11323
Number of successful extensions: 191
Number of sequences better than 1.0e-20: 2
length of query: 1121
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1105
effective length of database: 10,329,639
effective search space: 11414251095
effective search space used: 11414251095
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)