BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZG10FM1.SCF screened BAC_end
         (884 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1749                                                        1174   0.0  

>3x_Contig1749 
          Length = 22923

 Score = 1174 bits (592), Expect = 0.0
 Identities = 648/662 (97%), Gaps = 4/662 (0%)
 Strand = Plus / Minus

                                                                         
Query: 86    gatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaaagagc 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20456 gatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaaagagc 20397

                                                                         
Query: 146   catcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatggtgttc 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20396 catcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatggtgttc 20337

                                                                         
Query: 206   cttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcgatagttttcataa 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20336 cttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcgatagttttcataa 20277

                                                                         
Query: 266   agctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgccttaga 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20276 agctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgccttaga 20217

                                                                         
Query: 326   gatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaacattca 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20216 gatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaacattca 20157

                                                                         
Query: 386   aaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattgggaattac 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20156 aaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattgggaattac 20097

                                                                         
Query: 446   tagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcacgaggg 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20096 tagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcacgaggg 20037

                                                                         
Query: 506   cgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagcttaat 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20036 cgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagcttaat 19977

                                                                         
Query: 566   aggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactctatgcct 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19976 aggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactctatgcct 19917

                                                                         
Query: 626   gcgtncccacaggatctttngactctatgttcttttctatggctcttggatttttctttt 685
             |||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||
Sbjct: 19916 gcgtccccacaggatctttggactctatgttc-tttctatggctcttgga-ttttctttt 19859

                                                                         
Query: 686   ttttcctcccgctggattttccttttttttttggcttctttggaatttaaggatttttca 745
             ||| ||||||| ||||| |||||||| | | ||||| |||| |||| |||||||||| ||
Sbjct: 19858 tttccctcccg-tggatcttccttttctctctggctccttt-gaatctaaggattttcca 19801

               
Query: 746   ga 747
             ||
Sbjct: 19800 ga 19799


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,288
Number of Sequences: 1807
Number of extensions: 10288
Number of successful extensions: 118
Number of sequences better than 1.0e-20: 1
length of query: 884
length of database: 10,358,551
effective HSP length: 16
effective length of query: 868
effective length of database: 10,329,639
effective search space: 8966126652
effective search space used: 8966126652
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)