BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG10RM1.SCF screened BAC_end
(873 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1366 0.0
>3x_Contig1728
Length = 20685
Score = 1366 bits (689), Expect = 0.0
Identities = 739/752 (98%), Gaps = 4/752 (0%)
Strand = Plus / Plus
Query: 46 tggacctagaagaacagcacagggctagcactgtatcttccggtgacatccaatcggcgt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7687 tggacctagaagaacagcacagggctagcactgtatcttccggtgacatccaatcggcgt 7746
Query: 106 ccacaaaattaaaaagatctttgcaatctcaaggccggagaaccgttggcgtggattcag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7747 ccacaaaattaaaaagatctttgcaatctcaaggccggagaaccgttggcgtggattcag 7806
Query: 166 ataatactgctgatgccactggttccaatagcattaacttatgaacccattccaaacaaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7807 ataatactgctgatgccactggttccaatagcattaacttatgaacccattccaaacaaa 7866
Query: 226 atatatataatgtactcatatattgaagtatagtaaaaaaaaaatgaatgaaagcaaaaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7867 atatatataatgtactcatatattgaagtatagtaaaaaaaaaatgaatgaaagcaaaaa 7926
Query: 286 tgcatgtttaaaagtgtgggctggtatgacctcggaaaactgtatactttcagagatgaa 345
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 7927 tgcatgtttaaaagtgtgggctggtatgtcctcggaaaactgtattctttcagagatgaa 7986
Query: 346 taaacgcacccgttctggtttctttctcttagtttcgggctggtaatctgctgggaaaaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7987 taaacgcacccgttctggtttctttctcttagtttcgggctggtaatctgctgggaaaaa 8046
Query: 406 ccctggaatgaatctgctacagaccattcttaacatttagctttttctgtttccagcagg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8047 ccctggaatgaatctgctacagaccattcttaacatttagctttttctgtttccagcagg 8106
Query: 466 ctgggccgttctctgtggcattcattttcttccatctgtaaacgtcgatgcgaaaaaagt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8107 ctgggccgttctctgtggcattcattttcttccatctgtaaacgtcgatgcgaaaaaagt 8166
Query: 526 ctatcaggttcacgttaacatttcatttcattttgatatgatcgacatatatactgtgcc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8167 ctatcaggttcacgttaacatttcatttcattttgatatgatcgacatatatactgtgcc 8226
Query: 586 atggcatgaaaatgttaagaacacttttggagaaaaacatacagagagtcgttttgacag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8227 atggcatgaaaatgttaagaacacttttggagaaaaacatacagagagtcgttttgacag 8286
Query: 646 caattattcggttgggaaagtgggaactgcctgggttaatgattggtctccatctattaa 705
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 8287 caattattcggttggaaaagtgggaactgcctgggttaatgattggtctccatctataaa 8346
Query: 706 gcatcaggttcaattcaaatcgaaacaattcttttttttccttttaaaggtgttttctca 765
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 8347 gcatcaggttcaattcaaatcgaaacaattctttttttcccttt--aaggttgtttctca 8404
Query: 766 gtgctttcatacgtggtggacaatatcttttt 797
|||| ||||||||| || | ||||||||||||
Sbjct: 8405 gtgc-ttcatacgt-gttgtcaatatcttttt 8434
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,454
Number of Sequences: 1807
Number of extensions: 14454
Number of successful extensions: 129
Number of sequences better than 1.0e-20: 1
length of query: 873
length of database: 10,358,551
effective HSP length: 16
effective length of query: 857
effective length of database: 10,329,639
effective search space: 8852500623
effective search space used: 8852500623
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)