BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG11FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig534 1019 0.0
>3x_Contig534
Length = 2494
Score = 1019 bits (514), Expect = 0.0
Identities = 628/660 (95%), Gaps = 6/660 (0%)
Strand = Plus / Plus
Query: 87 tgggttatgctgataagcctcaacaagttgttaacttgttgaagaacattgaaaaggacc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tgggttatgctgataagcctcaacaagttgttaacttgttgaagaacattgaaaaggacc 889
Query: 147 aagccgttaagatcggtgctttctgtgtgcaattgttaggtttatactcattgggtgaaa 206
||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||
Sbjct: 890 aagccgttaagatcggtgctttcggcgtgcaattgtcaggtttatactcattgggtgaaa 949
Query: 207 ttatcggtata-gataggttgttggttaccgtaactactctactcaccactaaaaatgga 265
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 ttatcggtagaagaaaggttgttggttaccgtaactactctactcaccactaaaaatgga 1009
Query: 266 attgattgagaggccgaccgtatcaattttaaaagcatattcagtaacatacgaacgaaa 325
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 attgattgacaggccgaccgtatcaattttaaaagcatattcagtaacatacgaacgaaa 1069
Query: 326 ttttaacaactacaaacaacactatattcatttccagccaagaaaaaaacaacctaaaaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 ttttaacaactacaaacaacactatattcatttccagccaagaaaaaaacaacctaaaaa 1129
Query: 386 taaagcgacttttactctggtttcccagatgaagtgttaaaagactatatatatgtatcg 445
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 1130 taaagcgacttttactctggtttcccagatgaagtgttaaaagactatatatctgtctcg 1189
Query: 446 tctatatgtaatatacatacggattctgcgacgctttaattatatgtatatcatcatgac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 tctatatgtaatatacatacggattctgcgacgctttaattatatgtatatcatcatgac 1249
Query: 506 ttaattcgaacatttgatattggaaataagcaacaggggttatcctgaggttaggtcgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 ttaattcgaacatttgatattggaaataagcaacaggggttatcctgaggttaggtcgaa 1309
Query: 566 tcgttgccagcttttttcttggcatccgatacagagagtttccgtttctttgaagcttcg 625
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 tcgttgccagcttcttcctcggcatccgatacagagagtttccgtttctttgaagcttcg 1369
Query: 626 atcatttctcttcttttgcctctttttttg-tttacaacccttagaacaagtctgatttg 684
||||||||||||| |||| ||||||||||| ||||||||| | ||||| ||||||||
Sbjct: 1370 atcatttctcttc-tttgtctctttttttgttttacaaccttaggaacagtactgatttg 1428
Query: 685 tntcttttccacatgaacctttacctttttttcaaggattcccttctcttttttggacat 744
| || | ||||||||| |||| || |||||||| |||| |||||||| ||||||||||
Sbjct: 1429 tttcctctccacatgacccttaccc--tttttcaatgatt-ccttctctcttttggacat 1485
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,001
Number of Sequences: 1807
Number of extensions: 12001
Number of successful extensions: 146
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)