BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC4ZG11RM1.SCF screened BAC_end
         (982 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1460                                                         926   0.0  

>3x_Contig1460 
          Length = 9157

 Score =  926 bits (467), Expect = 0.0
 Identities = 549/567 (96%), Gaps = 7/567 (1%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcgcttcatatcctaaccattagcacttagactgcttcaatcctgatggcgctaactt 103
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7782 tggcgcttcatatcctaaccattagcacttagactgcttcaatcctgatggcgctaactt 7841

                                                                        
Query: 104  cattactcgtcctatctgtcattctttgttctgcctccagcttttactgtcataattgga 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7842 cattactcgtcctatctgtcattctttgttctgcctccagcttttactgtcataattgga 7901

                                                                        
Query: 164  ctttatctccttacccgattgggacattctaagcgatcaatctagtgctttctttctcaa 223
            ||||||||||||||||||||||||||||||||||||||||||||||||   ||  |||||
Sbjct: 7902 ctttatctccttacccgattgggacattctaagcgatcaatctagtgcaacctcgctcaa 7961

                                                                        
Query: 224  ggatcaaatgacgatatgatataaacacaagtacaaaagaaagcccataagcgtctaacg 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7962 ggatcaaatgacgatatgatataaacacaagtacaaaagaaagcccataagcgtctaacg 8021

                                                                        
Query: 284  tttctcccaggttattatcttaacctattcgtccatgtgaatcatactagcaccgaacag 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8022 tttctcccaggttattatcttaacctattcgtccatgtgaatcatactagcaccgaacag 8081

                                                                        
Query: 344  attatcaacaatttactcctctatagtgtcacttttggatataagttggaagcattttga 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8082 attatcaacaatttactcctctatagtgtcacttttggatataagttggaagcattttga 8141

                                                                        
Query: 404  accagaactttccccagaaacagaaaatcagaaattaaggcatcactgtaaaatcaaata 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8142 accagaactttccccagaaacagaaaatcagaaattaaggcatcactgtaaaatcaaata 8201

                                                                        
Query: 464  gtagatttgaaagcttcatgcataacatacaacatttttacgtaacttgaattagaacag 523
            ||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||
Sbjct: 8202 gtagatttgaaagcttcatgcataacagacaaca-ttttacgtaac-tgaattagaacag 8259

                                                                        
Query: 524  ggatggcagtatgtcaagaatgaaaatttcagagtctactgatattagtttcctgtgacc 583
            ||||||||| | |||||||||| ||||||||||||||||||||| ||| || |||||| |
Sbjct: 8260 ggatggcag-aagtcaagaatg-aaatttcagagtctactgatagtag-ttactgtga-c 8315

                                       
Query: 584  agctaatatgaatactttaaatgacag 610
            ||| || ||| ||||||||||||||||
Sbjct: 8316 agcaaagatg-atactttaaatgacag 8341


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7480
Number of Sequences: 1807
Number of extensions: 7480
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 982
length of database: 10,358,551
effective HSP length: 16
effective length of query: 966
effective length of database: 10,329,639
effective search space: 9978431274
effective search space used: 9978431274
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)