BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG12FM1.SCF screened BAC_end
(1103 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 280 6e-75
>3x_Contig1619
Length = 7770
Score = 280 bits (141), Expect = 6e-75
Identities = 163/169 (96%), Gaps = 1/169 (0%)
Strand = Plus / Minus
Query: 107 ctcactgttaatgagatgatataggttcaattcctattaaagacttaattattgcataat 166
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4580 ctcactgttaatgagatgatataggttcaattcctattaaagacttaattattgtataat 4521
Query: 167 atgtaggggttatagttaaatttggttgaacgaatgctttgcatgcatttaatatgagtt 226
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4520 atgtaggggttatagttaaatttggtagaacgaatgctttgcatgcatttaatatgagtt 4461
Query: 227 caagtctcatttactcttttatatataa-tccccgcgacctcctcaccg 274
||||||||||| |||| |||||||||| ||||||||||||||||||||
Sbjct: 4460 caagtctcattaactccattatatataactccccgcgacctcctcaccg 4412
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,933
Number of Sequences: 1807
Number of extensions: 42933
Number of successful extensions: 4805
Number of sequences better than 1.0e-20: 1
length of query: 1103
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1087
effective length of database: 10,329,639
effective search space: 11228317593
effective search space used: 11228317593
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)