BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZG12RM1.SCF screened BAC_end
(1044 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 672 0.0
>3x_Contig1619
Length = 7770
Score = 672 bits (339), Expect = 0.0
Identities = 422/447 (94%), Gaps = 4/447 (0%)
Strand = Plus / Plus
Query: 75 ctcacccttaattcaagggagtatcaagaaacccatcattaaaaga-acattattcccat 133
|||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 985 ctcagccttaattcaagg-agtatcaagaaacccatcattaaaagatacattattcccat 1043
Query: 134 tcgcaattttaggataaagagtgagtcctatttttcttatttatcccataatcttattaa 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 tcgcaattttaggataaagagtgagtcctatttttcttatttatcccataatcttattaa 1103
Query: 194 gattatgggatataattagaatataaaattgggtgaattgcaagaaactcctagtatttt 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 gattatgggatataattagaatataaaattgggtgaattgcaagaaactcctagtattta 1163
Query: 254 tttattttattaaatatggacaatttgcagcgaagttnataacaacctatattatattat 313
| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1164 ataattatattaaatatggacaatttgcagcgaagtttataacaacctatattatattat 1223
Query: 314 tatataataaccccacgcggctcgcccaaccctacggntagacgatgccgcgtggggagt 373
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 1224 tatataataaccccacgcggctcgtccaaccctacggttagacgatgccgcgtggggagt 1283
Query: 374 nataaaaacgtncaacgactagataatgagnnaggctaacaataatttatccacnagcgc 433
|||||||||| |||||||||||||||||| ||| |||||||||||||||||| |||||
Sbjct: 1284 tataaaaacgttcaacgactagataatgagttaggttaacaataatttatccacgagcgc 1343
Query: 434 ccaattatcaaatagattatatttgataatgacatancctgaacaacatataaatatatt 493
|||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct: 1344 ccaa-tatcaaatagattatatttgataatgacatagtctgaacaatatagaaatatatt 1402
Query: 494 gagtctaatatatctaattaatattag 520
||| ||||||||| ||| ||||||||
Sbjct: 1403 gag-ctaatatattaaataaatattag 1428
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,077
Number of Sequences: 1807
Number of extensions: 20077
Number of successful extensions: 428
Number of sequences better than 1.0e-20: 1
length of query: 1044
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1028
effective length of database: 10,329,639
effective search space: 10618868892
effective search space used: 10618868892
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)