BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZH01FM1.SCF screened BAC_end
(869 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1463 1219 0.0
>3x_Contig1463
Length = 9363
Score = 1219 bits (615), Expect = 0.0
Identities = 651/662 (98%), Gaps = 1/662 (0%)
Strand = Plus / Plus
Query: 85 ctgcctcgaaaaaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttaca 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2176 ctgcctcgaaaaaagagatgcaggatcgtgtttatcctcaagctgctgcttacccttaca 2235
Query: 145 ccggtgcattgctgcaaccaaatcctgtactatctggccatccactgggtcatcatcccc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2236 ccggtgcattgctgcaaccaaatcctgtactatctggccatccactgggtcatcatcccc 2295
Query: 205 atcctatcggttccccattccctggttacggttttaatacagctttctctcctgtcccgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2296 atcctatcggttccccattccctggttacggttttaatacagctttctctcctgtcccgg 2355
Query: 265 gccctactaacacgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2356 gccctactaacacgttgaatgcaggttctccagccatctccgcagatggcaaagaagcaa 2415
Query: 325 acagcagcggcgatccaagtggccaatctaaccgtcatgtacactctggaactaattccc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2416 acagcagcggcgatccaagtggccaatctaaccgtcatgtacactctggaactaattccc 2475
Query: 385 caggattgagtcaacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2476 caggattgagtcaacctggtagtctgccaatgtcaggacctaacccgtggatgtttgctg 2535
Query: 445 ctcctcacggtagtcctaacttcctggttccacaccctcatcattccggtcacgcaggcc 504
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 2536 ctcctcacggtagtcctaacttcctggttccacaccctcatcatccgggtcacgcaggcc 2595
Query: 505 ctccagctggccatcaaagaccacagagcaataaccctcaacatagaaaacgtcatttca 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2596 ctccagctggccatcaaagaccacagagcaataaccctcaacatagaaaacgtcatttca 2655
Query: 565 ataacaatggttctagtcgtagcaatttcngaaatatgaaacctcatggtaaacctcaac 624
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2656 ataacaatggttctagtcgtagcaatttcggaaatatgaaacctcatggtaaacctcaac 2715
Query: 625 gctttgaagatgggtctcgttatcaagatgctgtattggaacaattcgttgggtcaatct 684
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2716 gctttgaagatggttctcgttatcaagatgctgtattggaacaattcgttgggtcaatct 2775
Query: 685 actttttgtgtaaagatcaacacgtttgcagaattttaacacgtccagttggatgaaaat 744
||| ||||||||| |||||||||| ||||||| ||||| |||| |||||||||||||||
Sbjct: 2776 actctttgtgtaaggatcaacacggttgcagatttttacaacgt-cagttggatgaaaat 2834
Query: 745 gg 746
||
Sbjct: 2835 gg 2836
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5208
Number of Sequences: 1807
Number of extensions: 5208
Number of successful extensions: 24
Number of sequences better than 1.0e-20: 1
length of query: 869
length of database: 10,358,551
effective HSP length: 16
effective length of query: 853
effective length of database: 10,329,639
effective search space: 8811182067
effective search space used: 8811182067
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)