BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZH04FM1.SCF screened BAC_end
(867 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1326 0.0
>3x_Contig1630
Length = 14771
Score = 1326 bits (669), Expect = 0.0
Identities = 757/779 (97%), Gaps = 6/779 (0%)
Strand = Plus / Plus
Query: 85 cgatcagattagaaagcttattacatgccatgttaggatcaggaataattgaagatgagt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10382 cgatcagattagaaagcttattacatgccatgttaggatcaggaataattgaagatgagt 10441
Query: 145 ataatatgttcctttcatcaattcattcgaacatctcgaagggtagtagcagaaaactaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10442 ataatatgttcctttcatcaattcattcgaacatctcgaagggtagtagcagaaaactaa 10501
Query: 205 tacaggaattttttttctcagaacaaaagaaatcagttttaatttcaacggacataatgg 264
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10502 tacaggaatttgcatcctcagaacaaaagaaatcagttttaatttcaacggacataatgg 10561
Query: 265 ctagaggtatcgatataaatgaaattactcatgtgataaactatgatctaccgatctcct 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10562 ctagaggtatcgatataaatgaaattactcatgtgataaactatgatctaccgatctcct 10621
Query: 325 ctcaacaatatgttcatcgttgtggtagaactgcaagggctaatactgagggtatagcaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10622 ctcaacaatatgttcatcgttgtggtagaactgcaagggctaatactgagggtatagcaa 10681
Query: 385 ttaaccttctagttggtaagggtgaacagaaattctggtcacaacatattgacactgacc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10682 ttaaccttctagttggtaagggtgaacagaaattctggtcacaacatattgacactgacc 10741
Query: 445 tcagtcgtgacattgatggttatcaaccatctgcttaccttgacgaagaaaagttgtctg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10742 tcagtcgtgacattgatggttatcaaccatctgcttaccttgacgaagaaaagttgtctg 10801
Query: 505 aattattctctattgaagacactntgaaggatacgtacaagggttgtatcaaacaactcc 564
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 10802 aattattctctattgaagacactttgaaggatacgtacaagggttgtatcaaacaactcc 10861
Query: 565 aaaccagcanagaagcagacagtaaatagcatattatcactaaataagtaaaaagatcat 624
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10862 aaaccagcaaagaagcagacagtaaatagcatattatcactaaataagtaaaaagatcat 10921
Query: 625 agtaactgtaccccattcttggggctcgtctaagtgatatttgagaaggcactaatgatc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10922 agtaactgtaccccattcttggggctcgtctaagtgatatttgagaaggcactaatgatc 10981
Query: 685 ttatacttactatctatttttgcctcttctgatgagttgatcatgtgacatggtatttat 744
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10982 ttatacttactatcta-ttttgcctcttctgatgagttgatcatgtgacatgttatttat 11040
Query: 745 tggtcgaacagtggttttccttcactttaaaactttctttaccttaaattgaaatgtgga 804
|| |||| ||||| ||||||| ||||||| |||||||||||||||||||||| |||| ||
Sbjct: 11041 tgttcgagcagtgtttttcctccactttagaactttctttaccttaaattgatatgt-ga 11099
Query: 805 ttgaatcgttcaaaatcactgaaacccttataaacctttaaaagtacctttaggcaggt 863
||| |||||||| |||||||||||| | |||||||| || |||||||| ||||||||||
Sbjct: 11100 ttg-atcgttcagaatcactgaaacac-tataaacc-ttcaaagtacc-ttaggcaggt 11154
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6703
Number of Sequences: 1807
Number of extensions: 6703
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 867
length of database: 10,358,551
effective HSP length: 16
effective length of query: 851
effective length of database: 10,329,639
effective search space: 8790522789
effective search space used: 8790522789
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)