BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZH04RM1.SCF screened BAC_end
(854 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1736 1070 0.0
>3x_Contig1736
Length = 21222
Score = 1070 bits (540), Expect = 0.0
Identities = 603/616 (97%), Gaps = 6/616 (0%)
Strand = Plus / Minus
Query: 61 agacaatttactccaaaa-gataatttctctccgttatatttcactttctcaacctttgg 119
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 15088 agacaatttactccaaaaagataatttctctccgttatatttcactttctcaacctttgg 15029
Query: 120 attagtagctcatcgccaaattcactttcgcttatcataccttatatatatatatatata 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15028 attagtagctcatcgccaaattcactttcgcttatcataccttatatatatatatatata 14969
Query: 180 tatggatgttttccataatttttgtcgtttatgctcatcggaaatccattcgagactgaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14968 tatggatgttttccataatttttgtcgtttatgctcatcggaaatccattcgagactgaa 14909
Query: 240 tttttcacacagtactcgtttatattgaaaactcagaagaagctgaagaaaggtacgaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14908 tttttcacacagtactcgtttatattgaaaactcagaagaagctgaagaaaggtacgaaa 14849
Query: 300 ttcaagaaacttaccgaaagcttagtcttggagtaacaagctatatgatttacattatta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14848 ttcaagaaacttaccgaaagcttagtcttggagtaacaagctatatgatttacattatta 14789
Query: 360 aagcttgttttactaatacatatgaccattattaatgtgactatatatatgtgtatctat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14788 aagcttgttttactaatacatatgaccattattaatgtgactatatatatgtgtatctat 14729
Query: 420 atagcctgtatttacgagatggggacagagagatgtagaaaagagtgaattgtgagtatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14728 atagcctgtatttacgagatggggacagagagatgtagaaaagagtgaattgtgagtatt 14669
Query: 480 atatgatacaggtggatctcattgctggttcaagcacctgtgctgaacatttgtagtagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14668 atatgatacaggtggatctcattgctggttcaagcacctgtgctgaacatttgtagtagt 14609
Query: 540 gacttaactgctttcactgataccggtgtggtattcggatgagaatcgc-gatgttgatg 598
|||||| |||||||||||||||||||||| |||| |||||||| ||||| ||||||||||
Sbjct: 14608 gacttagctgctttcactgataccggtgt-gtatccggatgag-atcgcggatgttgatg 14551
Query: 599 cgtatggttttgccgggtaccttttttccgg-gtgatacattggaagtgtttgttgcaag 657
||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||| ||
Sbjct: 14550 cgtatggttttgccgggtaccttttctccggtgtgatacattggatgtg-ttgttgcgag 14492
Query: 658 caccctgcccagtttg 673
||| ||||| ||||||
Sbjct: 14491 cacactgccaagtttg 14476
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,392
Number of Sequences: 1807
Number of extensions: 12392
Number of successful extensions: 2264
Number of sequences better than 1.0e-20: 1
length of query: 854
length of database: 10,358,551
effective HSP length: 16
effective length of query: 838
effective length of database: 10,329,639
effective search space: 8656237482
effective search space used: 8656237482
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)