BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZH07FM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1334 1158 0.0
>3x_Contig1334
Length = 7302
Score = 1158 bits (584), Expect = 0.0
Identities = 641/655 (97%), Gaps = 4/655 (0%)
Strand = Plus / Plus
Query: 84 ataatgcttctccggactctatttggacgtaccttccctctgaaccccgtcgcacgttca 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4479 ataatgcttctccggactctatttggacgtaccttccctctgaaccccgtcgcacgttca 4538
Query: 144 gtgaattgaaaggttatctcgaaggtcttgccaaactaccactttccaagacttacgcaa 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4539 gtgaattgaaaggttatctcgaaggtcttgccaaactaccactttccaagacttacgcaa 4598
Query: 204 tcattaacaagatgactggaaaagctgttgggacgttttcattgattaggacggacatca 263
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4599 tcattaacaagaagactggaaaagctgttgggacgttttcattgattaggacggacatca 4658
Query: 264 ataatggggtcattgaagtaggattcgtcctcttttcaaaagatatgcaaaggacgttga 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4659 ataatggggtcattgaagtaggattcgtcctcttttcaaaagatatgcaaaggacgttga 4718
Query: 324 tatccacagaagcccactatctgctaatgaactatgttttcgaagatttagggtatcgaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4719 tatccacagaagcccactatctgctaatgaactatgttttcgaagatttagggtatcgaa 4778
Query: 384 gatatgagtggaaatgtgacagtttaaacaaaccatcgggtaacgcagctcaaagacttg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4779 gatatgagtggaaatgtgacagtttaaacaaaccatcgggtaacgcagctcaaagacttg 4838
Query: 444 gatttaaatttgagggtacgttccgaaatgcaatgatttacaaacaaagaactcgagaca 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4839 gatttaaatttgagggtacgttccgaaatgcaatgatttacaaacaaagaactcgagaca 4898
Query: 504 catgctggttttccatcattgacgaagaatgggcagttgctcggactgcctttaag-act 562
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4899 catgctggttttccatcattgacgaagaatgggcagttgctcggactgcctttaagaact 4958
Query: 563 ggttgtcgaaaaaatacttcgaccaagctgggaaacaattagaatcattactggagataa 622
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4959 ggttgtcgaaaaataacttcgaccaagctgggaaacaattagaatcattactggagataa 5018
Query: 623 gaagccgnctctgagctttaatttaatgttttttcctcgcctttcgagaatgacaattaa 682
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5019 gaagccgcctctgagctttaatttaatgttttttcctcg-ctttcgagaatgacaattaa 5077
Query: 683 tttaaagacaggttaagaagcccaacactatttcttttgttaacctttatgtatg 737
| ||||| ||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 5078 atcaaagagcagttaagaagccgaacacta-ttcttttgttaa-ctttatgtatg 5130
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6773
Number of Sequences: 1807
Number of extensions: 6773
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)