BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZH07RM1.SCF screened BAC_end
(870 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 1324 0.0
>3x_Contig1742
Length = 17167
Score = 1324 bits (668), Expect = 0.0
Identities = 717/727 (98%), Gaps = 6/727 (0%)
Strand = Plus / Minus
Query: 46 ctacccataacttccattctcgtattttagcagaaaccagttgatattatgtaagagatc 105
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13681 ctacccataacttccatgctcgtattttagcagaaaccagttgatattatgtaagagatc 13622
Query: 106 actgagacaaagttgattaagccaataatcgtcgcagtatgcatgttgtaggtaggtaca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13621 actgagacaaagttgattaagccaataatcgtcgcagtatgcatgttgtaggtaggtaca 13562
Query: 166 cttttattctatcgtatccttcattgcttatcgatgccggtgttattcttgctatgatag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13561 cttttattctatcgtatccttcattgcttatcgatgccggtgttattcttgctatgatag 13502
Query: 226 gccatcgaatgttaaagggaagatttattgttttgccctttaaagacgaatttggaccgt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13501 gccatcgaatgttaaagggaagatttattgttttgccctttaaagacgaatttggaccgt 13442
Query: 286 gaatgtttaaatattcacaaaagagtaataaacatttattttgaccgtgttaacaaattt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13441 gaatgtttaaatattcacaaaagagtaataaacatttattttgaccgtgttaacaaattt 13382
Query: 346 caataatacacacttggacataaacatattcatacatatagtctttagcttactcagatt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13381 caataatacacacttggacataaacatattcatacatatagtctttagcttactcagatt 13322
Query: 406 ctgcaacctctccgtctctgccataaaaacctttgtatatagttaggtagccatccccgt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13321 ctgcaacctctccgtctctgccataaaaacctttgtatatagttaggtagccatccccgt 13262
Query: 466 caacagtaccaattatatctcgaatcaaaggatgctgcgttacagaacccttgatcaaaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13261 caacagtaccaattatatctcgaatcaaaggatgctgcgttacagaacccttgatcaaaa 13202
Query: 526 ctgtattatcaggtttgtaggcggatcttctaccgccgccagtatgtaagaatttcaaag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13201 ctgtattatcaggtttgtaggcggatcttctaccgccgccagtatgtaagaatttcaaag 13142
Query: 586 -atgttcttgtatgtcatcttgatatatttcatcagaatctgcactgtcttcgccctgtt 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13141 aatgttcttgtatgtcatcttgatatatttcatcagaatctgcactgtcttcgccctgtt 13082
Query: 645 gctcgctttcgttgattaaatagctgatatcccaatggtacacattttcccgaagcacct 704
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 13081 gctcgctttcgttgattaaatagctgatatcccaatggtacaca-tttcccgaagcacct 13023
Query: 705 acagtgaggaaacattcggggtttcaagggggctgtaattggatatcgaccacaagaatc 764
|||||||||||||||||||| ||| | ||||||| ||||||||||||||||| || |||
Sbjct: 13022 acagtgaggaaacattcggg--ttccaaggggctg-aattggatatcgaccac-aggatc 12967
Query: 765 gttatct 771
|||||||
Sbjct: 12966 gttatct 12960
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5574
Number of Sequences: 1807
Number of extensions: 5574
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 870
length of database: 10,358,551
effective HSP length: 16
effective length of query: 854
effective length of database: 10,329,639
effective search space: 8821511706
effective search space used: 8821511706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)