BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZH08RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 924 0.0
>3x_Contig1487
Length = 9002
Score = 924 bits (466), Expect = 0.0
Identities = 513/526 (97%), Gaps = 2/526 (0%)
Strand = Plus / Plus
Query: 44 gcttgaat-cagtatcctcaggggtgttacaaaacagtttacaagcgttgagtactagat 102
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 gcttgaatacagtatcctcaggggtgttacaaaacagtttacaagcgttgagtactagat 1639
Query: 103 atgaggcgataattgacgatttggatgattcagataatataaagatcgagaagctatact 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1640 atgaggcgataattgacgatttggatgattcagataatataaagatcgagaagctatact 1699
Query: 163 cgttaccgaaggtgtcaacacctattgacgttaatattcgaattcttaagaaggttacta 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 1700 cgttaccgaaggtgtcaacacctattgacgttaatattcgaattcttaagaaggctacga 1759
Query: 223 aaccctgcgaagagaaacctgaggaagagtccatattaaaggagtatacttccggggata 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 aaccctgcgaagagaaacctgaggaagagtccatattaaaggagtatacttccggggata 1819
Query: 283 ttatcaacgggtttgttgttatagagaatagatctcaacatccccttcgattcgaaatgt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1820 ttatcaacgggtttgttgttatagagaatagatctcaacatccccttcgattcgaaatgt 1879
Query: 343 tttacgttacgttggaaggttgtgcatgtgtcattgataaaaaacaaggtaaacgtactg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1880 tttacgttacgttggaaggttgtgcatgtgtcattgataaaaaacaaggtaaacgtactg 1939
Query: 403 taaagagattccttagaatggtggatttatctgcaagttggtcttattcgaatattgatc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1940 taaagagattccttagaatggtggatttatctgcaagttggtcttattcgaatattgatc 1999
Query: 463 ttgccacggggttccagtatgttcccagagatatcgatcaggatggatgtgttttgggat 522
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 2000 ttgccacggggttccagtatgttccaggagatatcgatcaggatggatgtgtcttgggat 2059
Query: 523 t-aacaacgacagattctttcgccctgccgtcccttattaaaaatt 567
| ||||||||||||||||| | |||| ||||| |||| |||||||
Sbjct: 2060 taaacaacgacagattcttgcagcctggcgtccgttataaaaaatt 2105
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7838
Number of Sequences: 1807
Number of extensions: 7838
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)