BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZH10FM1.SCF screened BAC_end
(868 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1181 1302 0.0
>3x_Contig1181
Length = 5187
Score = 1302 bits (657), Expect = 0.0
Identities = 692/701 (98%), Gaps = 2/701 (0%)
Strand = Plus / Plus
Query: 86 atctagtttcttgtaccaactccagattaagtgatttggaaagtgcagcaaatgtggttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 atctagtttcttgtaccaactccagattaagtgatttggaaagtgcagcaaatgtggttt 2190
Query: 146 gtccaagtggtgacatcaaccaagttcacaaagtggcagaaggtgtggagttctacattg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2191 gtccaagtggtgacatcaaccaagttcacaaagtggcagaaggtgtggagttctacattg 2250
Query: 206 cggccgcctcttctgaagtggaagccgaagcaagagctactggtgcttggcaaaagctat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2251 cggccgcctcttctgaagtggaagccgaagcaagagctactggtgcttggcaaaagctat 2310
Query: 266 taaatgccggatgtttgcctcttcctgcaggttgtggaccatgtatcggtctcggaactg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2311 taaatgccggatgtttgcctcttcctgcaggttgtggaccatgtatcggtctcggaactg 2370
Query: 326 gtttgttagaagagggccaagtcggtatttctgccactaatagaaatttcaagggtagaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2371 gtttgttagaagagggccaagtcggtatttctgccactaatagaaatttcaagggtagaa 2430
Query: 386 tgggttctaaggatgcattagcatatctagcgtcaccatctgtggttgctgcctccgcta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2431 tgggttctaaggatgcattagcatatctagcgtcaccatctgtggttgctgcctccgcta 2490
Query: 446 tcttgggtaagattggttccccagccgaagttttaggtacaaaggatccaaatttcacag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2491 tcttgggtaagattggttccccagccgaagttttaggtacaaaggatccaaatttcacag 2550
Query: 506 gtgtcgtggctacggtagaagatgccccagctacttcagctgacggcaaggatgttgctg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2551 gtgtcgtggctacggtagaagatgccccagctacttcagctgacggcaaggatgttgctg 2610
Query: 566 atgaaagtggtgcttctggtagcgtagaaattctagaaggtttcccaagtgaaatttctg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2611 atgaaagtggtgcttctggtagcgtagaaattctagaaggtttcccaagtgaaatttctg 2670
Query: 626 gtgagttggtgctctgtgatgctgacaacatcaacactgatggtatctaccccagtaagt 685
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2671 gtgagttggtgctctgtgatgctgacaacatcaacactgatggtatctacccaggtaagt 2730
Query: 686 acacttatcaagatgatgtttccaaaggaaactatggccaa-gtttgtatggaaaaatac 744
|||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct: 2731 acacatatcaagatgatg-ttccaaaggaaactatggccaaggtttgtatggaaaattac 2789
Query: 745 catcctgattttcaaaccaaggcaaaccctggagaaatttt 785
|||||||||| ||||||||||||||||||||||| |||||
Sbjct: 2790 gatcctgatttccaaaccaaggcaaaccctggagatatttt 2830
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5457
Number of Sequences: 1807
Number of extensions: 5457
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 868
length of database: 10,358,551
effective HSP length: 16
effective length of query: 852
effective length of database: 10,329,639
effective search space: 8800852428
effective search space used: 8800852428
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)