BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC4ZH10RM1.SCF screened BAC_end
(859 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1246 1409 0.0
>3x_Contig1246
Length = 5473
Score = 1409 bits (711), Expect = 0.0
Identities = 786/803 (97%), Gaps = 6/803 (0%)
Strand = Plus / Plus
Query: 49 gaactaggaaatgcatgtcgggcgtgggtacgatggtggagaaaatgcttggtagcgaac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1257 gaactaggaaatgcatgtcgggcgtgggtacgatggtggagaaaatgcttggtagcgaac 1316
Query: 109 tgaacatataactggggaaccgtatgctattcgttatggaagacataacagtcgatatca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1317 tgaacatataactggggaaccgtatgctattcgttatggaagacataacagtcgatatca 1376
Query: 169 cctgattcgattgtgcataactgacattagaatcccttaaaattcttgccgtaatatttg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1377 cctgattcgattgtgcataactgacattagaatcccttaaaattcttgccgtaatatttg 1436
Query: 229 aaagcgcattgttatcaaacaccaccgacgcatcactatcttctattagtcgcctcaaag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1437 aaagcgcattgttatcaaacaccaccgacgcatcactatcttctattagtcgcctcaaag 1496
Query: 289 taagcatggtgttgtatggttgaaccacaacttcggattcatcgctggggaacactgaat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 taagcatggtgttgtatggttgaaccacaacttcggattcatcgctggggaacactgaat 1556
Query: 349 acgtggtgacgagcttcttatgatagctatcggccaataactccaataaattcgatccta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 acgtggtgacgagcttcttatgatagctatcggccaataactccaataaattcgatccta 1616
Query: 409 aacctgatcctgtaccaccagcgactgaatggatcaattggaacgcttcaaaattttctg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 aacctgatcctgtaccaccagcgactgaatggatcaattggaacgcttcaaaattttctg 1676
Query: 469 tcgcatctatttctctatcaatcatatttataaattggtcttgattttctgtaccatagt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 tcgcatctatttctctatcaatcatatttataaattggtcttgattttctgtaccatagt 1736
Query: 529 cgtaacctatcgaccatgtattaccagctcctaaattatcctgcgacacccaaacgtttc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 cgtaacctatcgaccatgtattaccagctcctaaattatcctgcgacacccaaacgtttc 1796
Query: 589 tttcgttaaaaaaacctgggaaactgtttcgtatatcgttgataatactggggctct-aa 647
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 1797 tttcgttaaaaaaacctgggaaactgtttcgtatatcgttgataatact-gggctctaaa 1855
Query: 648 tcgaaaagtaatgcacgtggagtgtaccgatttgaatcgttttgttttgaaaaagtcact 707
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1856 tcgaaaagtaatgcacgtggagtgtaccgatttgaatcgttttgtttgaaaaaagtcact 1915
Query: 708 ggatggtcttctctaacggctgtgggagaatctttttgtcaacttagaccatctttgtcc 767
|||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct: 1916 ggatggtcttctctaacggctgtgggagaatcttcttgcaaacttagaccatc-ttgtcc 1974
Query: 768 -attccatgctctttcgccaattgggaccagaacttttgcccaacttgggtcccgcaccg 826
||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||| |
Sbjct: 1975 aattccatgctctttcgccaattgtgaccagaactctcgcccaacttggttcccgca-ct 2033
Query: 827 ggcccacttgccaaagtaattac 849
|||| ||||| ||||||||||||
Sbjct: 2034 ggccaacttg-caaagtaattac 2055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5138
Number of Sequences: 1807
Number of extensions: 5138
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 859
length of database: 10,358,551
effective HSP length: 16
effective length of query: 843
effective length of database: 10,329,639
effective search space: 8707885677
effective search space used: 8707885677
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)