BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA01RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1174 1316 0.0
>3x_Contig1174
Length = 6106
Score = 1316 bits (664), Expect = 0.0
Identities = 708/720 (98%), Gaps = 2/720 (0%)
Strand = Plus / Minus
Query: 48 tgaaacttttaggtcaagctctttctcgtatgattttaccaataactcattcttttgaat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tgaaacttttaggtcaagctctttctcgtatgattttaccaataactcattcttttgaat 773
Query: 108 ctcagcgttctcgcccttcaaataatctaccaaaaaatcctttattgctccatattttac 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ctcagcgttctcgcccttcaaataatctaccaaaaaatcctttattgctccatattttac 713
Query: 168 cacatttgtaccgctcaatgtttggataatctcaagcggcgacatcattttttattttag 227
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 712 cacatttgtaccgctcaatgtttggataatctcaagcggcgacatcaaatcgaattttag 653
Query: 228 tactttattcaatatcttctccctgaagacagactccccgccgatatcttcataaatttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tactttattcaatatcttctccctgaagacagactccccgccgatatcttcataaatttg 593
Query: 288 cttgcttgatacaaagaaaggcatagcgatcttatacaaatcgtgttcgctctctccata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttgcttgatacaaagaaaggcatagcgatcttatacaaatcgtgttcgctctctccata 533
Query: 348 tttttctaggaaactgagacaaacgtgagggtcattcgtcaagcacatagagcggaaaac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tttttctaggaaactgagacaaacgtgagggtcattcgtcaagcacatagagcggaaaac 473
Query: 408 atcagaaagactaacatgactgattatcgaatttgattcttgttcatcttcctgcataga 467
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atcagacagactaacatgactgattatcgaatttgattcttgttcatcttcctgcataga 413
Query: 468 tgagagagtaaaaggattcatatcgtgcatatgagaaattaaaagcattagtgaactatc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tgagagagtaaaaggattcatatcgtgcatatgagaaattaaaagcattagtgaactatc 353
Query: 528 aggtgctctttcacttgcttgccttattttatacttttctgtttcttctaaaacggcttc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aggtgctctttcacttgcttgccttattttatacttttctgtttcttctaaaacggcttc 293
Query: 588 tgctttgcctttccattctgcctttctttcttcaatgtcgtcctcatataacgacaaata 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tgctttgcctttccattctgcctttctttcttcaatgtcgtcctcatataacgacaaata 233
Query: 648 tatatctgaaagtgttgtcaatatatcttgacggtcctggtcatagccttggaatcgttt 707
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tatatcgtaaagtgttgtcaatatatcttgacggtcctggtcatagccttggaatcgttt 173
Query: 708 atagctctctagacaagcttcgaggaaaacgactaattgtgaatggttttttgaacaaaa 767
|||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||
Sbjct: 172 atagctttctagacaagcttcgaggaaaacgacaaattg-gaatgg-tttttgaacaaaa 115
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7836
Number of Sequences: 1807
Number of extensions: 7836
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)