BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA02FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1453 0.0
>3x_Contig1782
Length = 24703
Score = 1453 bits (733), Expect = 0.0
Identities = 787/803 (98%), Gaps = 2/803 (0%)
Strand = Plus / Minus
Query: 86 tactaatgcttttgacacagtaggaggcgtgctgttcaacaaaggagacgattccacgcc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4210 tactaatgcttttgacacagtaggaggcgtgctgttcaacaaaggagacgattccacgcc 4151
Query: 146 attgctgttctcaaagtttgtttctcttccaccaagtttctgtttctcttgcttcttcaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4150 attgctgttctcaaagtttgtttctcttccaccaagtttctgtttctcttgcttcttcaa 4091
Query: 206 tgcactacgtaaggtgtggctagccttctcgcttaacttactctcatccttatccgtatc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4090 tgcactacgtaaggtgtggctagccttctcgcttaacttactctcatccttatccgtatc 4031
Query: 266 cagaaactgagccctagtttcgttaatgtcactcatgtcgttctcactggcaatgattaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4030 cagaaactgagccctagtttcgttaatgtcactcatgtcgttctcactggcaatgattaa 3971
Query: 326 ctctgcaaattaaaatcaaatcacaaaaatcacagccaatatgaaacaattgctttacca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3970 ctctgcaaattaaaatcaaatcacaaaaatcacagccaatatgaaacaattgctttacca 3911
Query: 386 gttgaatggtagtccttctgctatttttttctgtcgtcctttgtccctttcttcgtaaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3910 gttgaatggtagtccttctgctatttttttctgtcgtcctttgtccctttcttcgtaaag 3851
Query: 446 gtcagtcttaactcaatctttgttcaaatcctttattttttatgttgataatatgacaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3850 gtcagtcttaactcaatctttgttcaaatcctttattttttatgttgataatatgacaaa 3791
Query: 506 gatcacctgaaatacggttacattattaaaagactatgtcatcgcaggacaactacggac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3790 gatcacctgaaatacggttacattattaaaagactatgtcatcgcaggacaactacggac 3731
Query: 566 caaagaggaccgttaagtatacttaagcagttgatatatgttgatatagtggtaaaggtg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3730 caaagaggaccgttaagtatacttaagcagttgatatatgttgatatagtggtaaaggtg 3671
Query: 626 ttggttatattgttttttttttgagttttcatgttcaagaaacgagtagtgaaaggttcc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3670 ttggttatattgttttttttttgagttttcatgttcaagaaacgagtagtgaaaggttcc 3611
Query: 686 agggatagcaaaaggaaacgacttgcagatgaggccgtcgcatctgacccagtgctgccg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3610 agggatagcaaaaggaaacgacttgcagatgaggccgtcgcatctgacccagtgctgccg 3551
Query: 746 aaagataccgnaaagaccgctgttgctgaagcacangtttgagttgaaaatgaggataaa 805
|||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 3550 aaagataccggaaagaccgctgttgctgaagcacaggttgaggttgaaaatgaggataaa 3491
Query: 806 cgtgctttgtatctagcaaaagaaggagaagagcatgtaccagatttggtactctcgaag 865
|||||||||||||||||||||||| |||||||||| | || || |||| |||| |||||
Sbjct: 3490 cgtgctttgtatctagcaaaagaaagagaagagcaagaacaggagttggaactc-cgaag 3432
Query: 866 aaag-aacgttcggttttagaac 887
||| ||||| ||||||||||||
Sbjct: 3431 gaaggaacgtacggttttagaac 3409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7880
Number of Sequences: 1807
Number of extensions: 7880
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)