BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA02RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1781 1614 0.0
>3x_Contig1781
Length = 20717
Score = 1614 bits (814), Expect = 0.0
Identities = 851/858 (99%), Gaps = 4/858 (0%)
Strand = Plus / Plus
Query: 46 ctaagtacaaagccaagaacaacagcaacaatagtaatagtaattctggtaacactaatc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9060 ctaagtacaaagccaagaacaacagcaacaatagtaatagtaattctggtaacactaatc 9119
Query: 106 acaacacaaacggcaacagttcacataattccccatcaccagaactctcgttaaaccaag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9120 acaacacaaacggcaacagttcacataattccccatcaccagaactctcgttaaaccaag 9179
Query: 166 gtaattccacgcttaaaaagagctcagtgaaatcccgtaatgacaaatcaaagaactaat 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9180 gtaattccacgcttaaaaagagctcagtgaaatcccgtaatgacaaatcaaagaactaat 9239
Query: 226 ctcatgtactttaatcgtaaacccaaatcatctcaaacctaaatgaaaggcgtgataaaa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9240 ctcatgtactttaatcgtaaacccaaatcatctcaaacctaaatgaaaggcgtgataaaa 9299
Query: 286 ccatattataaaaaaaaaaaccataaaaaaaattaactaaaacgatgaaactatgagtcg 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9300 ccatattataaaaaaaaaaaccataaaaaaaattaactaaaacgatgaaactatgagtcg 9359
Query: 346 gggaaaacttgttaaatatatccgtatgtaacctatccacatgtacattttatatatttc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9360 gggaaaacttgttaaatatatccgtatgtaacctatccacatgtacattttatatatttc 9419
Query: 406 cctctcactataagcatatcaccgaaacattattgttgtcttccctttttgttccttctt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9420 cctctcactataagcatatcaccgaaacattattgttgtcttccctttttgttccttctt 9479
Query: 466 tctctaagtcacaaccctttgaagttggttcgagcttgatgaaatttaaaggaacaaaga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9480 tctctaagtcacaaccctttgaagttggttcgagcttgatgaaatttaaaggaacaaaga 9539
Query: 526 tcttcatgtgcacatcacaatgatagaaaaggtgattggcagaaagatcagtgctgaagc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9540 tcttcatgtgcacatcacaatgatagaaaaggtgattggcagaaagatcagtgctgaagc 9599
Query: 586 caaggggacaggtgaggagatacaactctagggtcatagaaaccatcagctatgttagtt 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9600 caaggggacaggtgaggagatacaactctagggtcatagaaaccatcagctatgttagtt 9659
Query: 646 cctccagcgaatttcgggattcccgaggaaggtatctatcgatgcagtaaacttgagacc 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9660 cctccagcgaatttcgggattcccgaggaaggtatctatcgatgcagtaaacttgagacc 9719
Query: 706 attaacctatcattttttggagactttgaatttaaatacgatcatattcatcggtggtca 765
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9720 attaacctatca-tttttggagactttgaatttaaatacgatcatattcatcggtggtca 9778
Query: 766 aatcccgagtaatttcttcaaagagttctttcgccacttacggcatagattactttgtca 825
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 9779 aatcccgagtaatttcttcaaagagttc-ttcgccactaacggcatagattactttgtca 9837
Query: 826 ttaagaccttctggtgattcgagttcttttggtagccccagatcacaaaaagcgtcaatc 885
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 9838 ttaagacc-tctggtgattcgagttc-tttggtagccccagatcacaaaaagcgtcaatc 9895
Query: 886 ttctgcgaaacattgtga 903
||||||||| ||| ||||
Sbjct: 9896 ttctgcgaatcatggtga 9913
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,607
Number of Sequences: 1807
Number of extensions: 12607
Number of successful extensions: 137
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)