BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA03FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1013 0.0
>3x_Contig1468
Length = 9852
Score = 1013 bits (511), Expect = 0.0
Identities = 574/595 (96%)
Strand = Plus / Minus
Query: 89 ctagccagagtaagctctgttttaaagtttatttcctaatattataatgaatgtatagta 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ctagccagagtaagctctgttttaaagtttatttcctaatattataatgaatgtatagta 599
Query: 149 agatttatataatgtacagaattcaatcggagtaaaccgagcttgatggcttttatgtct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agatttatataatgtacagaattcaatcggagtaaaccgagcttgatggcttttatgtct 539
Query: 209 ttcgattctctcctccaatatcaataacggttaacaatggaatagagttttcctaggaac 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttcgattctctcctccaatatcaataacggttaacaatggaatagagttttcctaggaac 479
Query: 269 tataaatcacattaccaactttctgggtaatttgatccaagagtaaggcatcatatttgt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tataaatcacattaccaactttctgggtaatttgatccaagagtaaggcatcatatttgt 419
Query: 329 gtttttgatcatctcgtatatctcaatgcattaggttaaagttccttttgaaaaaaaaag 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtttttgatcatctcgtatatctcaatgcattaggttaaagttccttttgaaaaaaaaag 359
Query: 389 aaagagaggtgaaagtaggggcagacgtatcccctcgaattagtttgtggttttcatgtc 448
||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 358 aaagataggtgaaagtaggggcagacgtatcccctcgaattagttttttgttttcatgtc 299
Query: 449 tacaattctccacgtttcttagacggaatgtaatttgtattctctttgggggctatgtgc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tacaattctccacgtttcttagacggaatgtaatttgtattctctttgggggctatgtgc 239
Query: 509 attgggtgctgctatgttgagcctggcgaattatttgatttcgcaagcgtggtctttctt 568
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 238 attgggtgctgctatgttgagcctggcgaattattttatttcgcaagcgtggtctttctt 179
Query: 569 gaatgtgctagagtgtctaaaacttcgtcaaacgcgcggtccatttgttcttcttgctgt 628
|||||||||||| | ||||||||||| |||||| | | ||||||| |||||||| || |
Sbjct: 178 gaatgtgctagattttctaaaacttcctcaaactctctttccattttttcttctttcttt 119
Query: 629 acttctttctcgctactatagtcgctatcagaatacccatcacctttcttctcct 683
||||||| | |||||||| || |||||| ||||||||||||||||||||||||
Sbjct: 118 acttcttaatacctactataatccctatcataatacccatcacctttcttctcct 64
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8278
Number of Sequences: 1807
Number of extensions: 8278
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)