BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA04FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1589 1404 0.0
>3x_Contig1589
Length = 10239
Score = 1404 bits (708), Expect = 0.0
Identities = 818/840 (97%), Gaps = 11/840 (1%)
Strand = Plus / Minus
Query: 85 cgagagtttcgcttagttcgatttctttttcgtcatttgaatcatagagccacaattgtg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 cgagagtttcgcttagttcgatttctttttcgtcatttgaatcatagagccacaattgtg 3505
Query: 145 ggatattgtcacgtgattttgcttcatcaaatcacctgaacaggcggaagtggctcatgc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 ggatattgtcacgtgattttgcttcatcaaatcacctgaacaggcggaagtggctcatgc 3445
Query: 205 atgtggtggaatagtggtcttcctgaacgtttccatttggtatagtagggtcttagcacg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 atgtggtggaatagtggtcttcctgaacgtttccatttggtatagtagggtcttagcacg 3385
Query: 265 ttcctttacgtctaaatcgccgttccaatccaagattttctttactgcgtcattgaaacc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 ttcctttacgtctaaatcgccgttccaatccaagattttctttactgcgtcattgaaacc 3325
Query: 325 tagcttatcgagctttttgaaccttatgattgctggacttaaagccgaaatgtttccagt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 tagcttatcgagctttttgaaccttatgattgctggacttaaagccgaaatgtttccagt 3265
Query: 385 ggtagttgctgggcggatgaaatctttatgaggatcagttgagtcctcttcttcgtcatt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 ggtagttgctgggcggatgaaatctttatgaggatcagttgagtcctcttcttcgtcatt 3205
Query: 445 actttgctcctcttcgtcgaaatcaccttctcgctcttcttgttctgggacttcttcttc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 actttgctcctcttcgtcgaaatcaccttctcgctcttcttgttctgggacttcttcttc 3145
Query: 505 ttctgaagacatgtttgatgctcgtgcatttaatggcattctaacgagaggatcatcgtt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 ttctgaagacatgtttgatgctcgtgcatttaatggcattctaacgagaggatcatcgtt 3085
Query: 565 tctgtcttcgagagctgagctgctaccttcttgaagggcccagtccgtgtcgaagtgcgg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 tctgtcttcgagagctgagctgctaccttcttgaagggcccagtccgtgtcgaagtgcgg 3025
Query: 625 gtttccgttttctggtagagaattattgtaagggacgtgctggatggaggagtcccatat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 gtttccgttttctggtagagaattattgtaagggacgtgctggatggaggagtcccatat 2965
Query: 685 tagattcgtgattatccaaagacacgctttagt-atttcatctcccttggccattaagat 743
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2964 tagattcgtgattatccaaagacacgctttagtaatttcatctcccttggccattaagat 2905
Query: 744 -tattctttcacgatatctaatagttcattctgggaaataaccaaggttcctcttggttt 802
||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||| ||||
Sbjct: 2904 atattctttcacgatatctagtagttcatcctgggaaataacc-aggtttctctt-gttt 2847
Query: 803 tca-ttatagccggggaaactgaccactttatagagtagtgcttcaacgatccttattgt 861
||| |||||| ||| |||| |||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 2846 tcatttatag-cggtgaaattgaccactatatagagtagtgcttcagcgat-cttattgt 2789
Query: 862 cactgtnaataaccggccatcatgccataccagttttcaattttcaaagcttaaaacctt 921
|||||| ||||| | | |||||||| ||| |||||||||| |||||||||| ||||||||
Sbjct: 2788 cactgt-aataa-ctgtcatcatgcaata-cagttttcaa-tttcaaagctaaaaacctt 2733
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7174
Number of Sequences: 1807
Number of extensions: 7174
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)