BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA04RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig707 668 0.0
3x_Contig1704 379 e-105
>3x_Contig707
Length = 1885
Score = 668 bits (337), Expect = 0.0
Identities = 386/396 (97%), Gaps = 5/396 (1%)
Strand = Plus / Minus
Query: 493 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcataaagagctgccagat 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tggcggccaatctttgtgccgttttcgacgctcagtgcagatcataaagagctgccagat 1826
Query: 553 tctatcttcggatcggatataataaggactttgacaccaatcaaaacattcatggatatt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 tctatcttcggatcggatataataaggactttgacaccaatcaaaacattcatggatatt 1766
Query: 613 agatttactatagactctgatactccaacacagattacctggggtaaatctcttcagcca 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 agatttactatagactctgatactccaacacagattacctggggtaaatctcttcagcca 1706
Query: 673 ggttatcaaagcgtaatgttgtggtttgatttcctaacgaagccttcaatggatccatct 732
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1705 ggttatcaaagcgtaatgttgtggtttgatttcctaacgaagcctccaatggatccatct 1646
Query: 733 cccaaagtanggttctgggataaaatcaggcttttatttcatggtaaactcgagttccaa 792
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 cccaaagtagggttctgggataaaatcaggcttttatttcatggtaaactcgagttccaa 1586
Query: 793 tggcttagtaatagttcaatgcactttaaattttaagggatccaggtgatccttattcga 852
|||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct: 1585 tggcttagtaatagttcaatgcac-ttaaattttaagggat-caagtgatccttattcga 1528
Query: 853 ttagcagatgttaggaccaggccttgacatttgctt 888
||||||||| ||||| |||| | ||||||||||||
Sbjct: 1527 -tagcagatg-taggagcagg-catgacatttgctt 1495
>3x_Contig1704
Length = 14855
Score = 379 bits (191), Expect = e-105
Identities = 191/191 (100%)
Strand = Plus / Minus
Query: 48 cggaactgaagaatatctcaatcaacagtataccagactttatgagaatttttcaacttc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cggaactgaagaatatctcaatcaacagtataccagactttatgagaatttttcaacttc 143
Query: 108 ttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatcttatgcagt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttggatagcaagatatcgagttgctaaaaggaagtttcatggtgctgaatcttatgcagt 83
Query: 168 caataacaccattttagactacgaattttccacgttttctgttgacaacgatgtaaattc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 caataacaccattttagactacgaattttccacgttttctgttgacaacgatgtaaattc 23
Query: 228 actcaaaattt 238
|||||||||||
Sbjct: 22 actcaaaattt 12
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6324
Number of Sequences: 1807
Number of extensions: 6324
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)